Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27035 and PS417_27040 are separated by 205 nucleotides PS417_27040 and PS417_27045 are separated by 63 nucleotides PS417_27045 and PS417_27050 are separated by 134 nucleotides
PS417_27035: PS417_27035 - FAD-linked oxidase, at 5,837,690 to 5,839,084
_27035
PS417_27040: PS417_27040 - 3-phosphoglycerate dehydrogenase, at 5,839,290 to 5,840,519
_27040
PS417_27045: PS417_27045 - ATPase, at 5,840,583 to 5,841,023
_27045
PS417_27050: PS417_27050 - ABC transporter substrate-binding protein, at 5,841,158 to 5,841,652
_27050
Position (kb) 5839
5840
5841 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 5838.511 kb on + strand, within PS417_27035 at 5838.703 kb on - strand, within PS417_27035 at 5838.805 kb on + strand, within PS417_27035 at 5838.805 kb on + strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5838.806 kb on - strand, within PS417_27035 at 5839.055 kb on + strand at 5839.055 kb on + strand at 5839.141 kb on + strand at 5839.141 kb on + strand at 5839.142 kb on - strand at 5839.142 kb on - strand at 5839.142 kb on - strand at 5839.162 kb on - strand at 5839.162 kb on - strand at 5839.171 kb on + strand at 5839.398 kb on + strand at 5839.398 kb on + strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.399 kb on - strand at 5839.828 kb on - strand, within PS417_27040 at 5840.233 kb on - strand, within PS417_27040 at 5840.233 kb on - strand, within PS417_27040 at 5840.584 kb on + strand at 5840.584 kb on + strand at 5840.588 kb on + strand at 5840.616 kb on + strand at 5840.616 kb on + strand at 5840.617 kb on - strand at 5840.910 kb on + strand, within PS417_27045 at 5840.910 kb on + strand, within PS417_27045 at 5840.910 kb on + strand, within PS417_27045 at 5840.911 kb on - strand, within PS417_27045 at 5841.104 kb on + strand at 5841.104 kb on + strand at 5841.148 kb on - strand at 5841.180 kb on + strand at 5841.180 kb on + strand at 5841.181 kb on - strand at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.234 kb on + strand, within PS417_27050 at 5841.235 kb on - strand, within PS417_27050 at 5841.373 kb on + strand, within PS417_27050 at 5841.376 kb on + strand, within PS417_27050 at 5841.376 kb on + strand, within PS417_27050 at 5841.377 kb on - strand at 5841.422 kb on + strand, within PS417_27050 at 5841.423 kb on - strand, within PS417_27050 at 5841.423 kb on - strand, within PS417_27050 at 5841.448 kb on + strand, within PS417_27050
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 5,838,511 + PS417_27035 0.59 +0.1 5,838,703 - PS417_27035 0.73 -0.4 5,838,805 + PS417_27035 0.80 -0.7 5,838,805 + PS417_27035 0.80 -0.3 5,838,806 - PS417_27035 0.80 -0.5 5,838,806 - PS417_27035 0.80 +0.2 5,838,806 - PS417_27035 0.80 -2.3 5,838,806 - PS417_27035 0.80 +0.7 5,839,055 + +0.4 5,839,055 + +2.6 5,839,141 + -0.3 5,839,141 + -1.0 5,839,142 - +0.1 5,839,142 - +0.3 5,839,142 - -0.1 5,839,162 - -0.5 5,839,162 - -0.4 5,839,171 + -2.3 5,839,398 + -3.0 5,839,398 + -6.9 5,839,399 - -3.4 5,839,399 - -2.4 5,839,399 - -4.5 5,839,399 - -0.8 5,839,828 - PS417_27040 0.44 -1.3 5,840,233 - PS417_27040 0.77 -5.6 5,840,233 - PS417_27040 0.77 -1.6 5,840,584 + +0.3 5,840,584 + -0.1 5,840,588 + -0.8 5,840,616 + +0.5 5,840,616 + -0.2 5,840,617 - +0.4 5,840,910 + PS417_27045 0.74 -1.1 5,840,910 + PS417_27045 0.74 -0.3 5,840,910 + PS417_27045 0.74 +0.3 5,840,911 - PS417_27045 0.74 -1.1 5,841,104 + -0.2 5,841,104 + -0.2 5,841,148 - +0.8 5,841,180 + -0.4 5,841,180 + +1.1 5,841,181 - +0.3 5,841,234 + PS417_27050 0.15 +0.0 5,841,234 + PS417_27050 0.15 +1.8 5,841,234 + PS417_27050 0.15 -0.5 5,841,234 + PS417_27050 0.15 -1.4 5,841,235 - PS417_27050 0.16 +0.5 5,841,373 + PS417_27050 0.43 +0.2 5,841,376 + PS417_27050 0.44 +0.3 5,841,376 + PS417_27050 0.44 +1.6 5,841,377 - +3.3 5,841,422 + PS417_27050 0.53 +0.3 5,841,423 - PS417_27050 0.54 -0.4 5,841,423 - PS417_27050 0.54 -1.0 5,841,448 + PS417_27050 0.59 +1.2
Or see this region's nucleotide sequence