Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_24400 and PS417_24405 are separated by 162 nucleotides PS417_24405 and PS417_24410 are separated by 81 nucleotides
PS417_24400: PS417_24400 - peptidase, at 5,296,728 to 5,298,464
_24400
PS417_24405: PS417_24405 - heme acquisition protein HasAp, at 5,298,627 to 5,299,247
_24405
PS417_24410: PS417_24410 - ligand-gated channel, at 5,299,329 to 5,301,986
_24410
Position (kb) 5298
5299
5300 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 5298.175 kb on + strand, within PS417_24400 at 5298.334 kb on + strand at 5298.334 kb on + strand at 5298.335 kb on - strand at 5298.349 kb on + strand at 5298.350 kb on - strand at 5298.350 kb on - strand at 5298.350 kb on - strand at 5298.419 kb on + strand at 5298.421 kb on + strand at 5298.421 kb on + strand at 5298.422 kb on - strand at 5298.422 kb on - strand at 5298.556 kb on - strand at 5298.580 kb on - strand at 5298.580 kb on - strand at 5298.835 kb on + strand, within PS417_24405 at 5298.850 kb on - strand, within PS417_24405 at 5298.850 kb on - strand, within PS417_24405 at 5298.928 kb on + strand, within PS417_24405 at 5298.998 kb on + strand, within PS417_24405 at 5298.998 kb on + strand, within PS417_24405 at 5299.024 kb on + strand at 5299.025 kb on - strand, within PS417_24405 at 5299.025 kb on - strand, within PS417_24405 at 5299.025 kb on - strand, within PS417_24405 at 5299.172 kb on - strand, within PS417_24405 at 5299.236 kb on - strand at 5299.411 kb on + strand at 5299.411 kb on + strand at 5299.480 kb on + strand at 5299.560 kb on + strand at 5299.560 kb on + strand at 5299.567 kb on + strand at 5299.597 kb on - strand at 5299.597 kb on - strand, within PS417_24410 at 5299.828 kb on + strand, within PS417_24410 at 5299.915 kb on + strand, within PS417_24410 at 5299.916 kb on - strand, within PS417_24410 at 5299.973 kb on + strand, within PS417_24410 at 5299.975 kb on + strand, within PS417_24410 at 5299.975 kb on + strand, within PS417_24410 at 5299.975 kb on + strand, within PS417_24410 at 5299.975 kb on + strand, within PS417_24410 at 5299.976 kb on - strand, within PS417_24410 at 5299.976 kb on - strand, within PS417_24410 at 5299.976 kb on - strand, within PS417_24410 at 5299.976 kb on - strand, within PS417_24410 at 5300.005 kb on + strand, within PS417_24410 at 5300.006 kb on - strand, within PS417_24410 at 5300.198 kb on - strand, within PS417_24410 at 5300.198 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 5,298,175 + PS417_24400 0.83 +1.3 5,298,334 + -0.3 5,298,334 + -1.2 5,298,335 - +0.1 5,298,349 + +1.4 5,298,350 - +0.2 5,298,350 - -0.3 5,298,350 - +0.9 5,298,419 + +1.1 5,298,421 + -2.5 5,298,421 + -0.1 5,298,422 - +0.5 5,298,422 - -0.2 5,298,556 - +0.2 5,298,580 - -0.3 5,298,580 - +0.3 5,298,835 + PS417_24405 0.33 -0.1 5,298,850 - PS417_24405 0.36 +3.0 5,298,850 - PS417_24405 0.36 +1.1 5,298,928 + PS417_24405 0.48 +0.1 5,298,998 + PS417_24405 0.60 +0.7 5,298,998 + PS417_24405 0.60 +0.9 5,299,024 + -0.9 5,299,025 - PS417_24405 0.64 -0.3 5,299,025 - PS417_24405 0.64 +3.8 5,299,025 - PS417_24405 0.64 -0.2 5,299,172 - PS417_24405 0.88 +0.5 5,299,236 - +0.5 5,299,411 + +0.7 5,299,411 + -2.0 5,299,480 + -0.1 5,299,560 + +0.3 5,299,560 + -0.1 5,299,567 + -0.3 5,299,597 - +2.0 5,299,597 - PS417_24410 0.10 -0.9 5,299,828 + PS417_24410 0.19 +0.2 5,299,915 + PS417_24410 0.22 +0.5 5,299,916 - PS417_24410 0.22 -0.7 5,299,973 + PS417_24410 0.24 -0.5 5,299,975 + PS417_24410 0.24 +0.2 5,299,975 + PS417_24410 0.24 -0.2 5,299,975 + PS417_24410 0.24 -0.2 5,299,975 + PS417_24410 0.24 -0.0 5,299,976 - PS417_24410 0.24 -0.1 5,299,976 - PS417_24410 0.24 -1.2 5,299,976 - PS417_24410 0.24 +0.2 5,299,976 - PS417_24410 0.24 +0.6 5,300,005 + PS417_24410 0.25 -0.8 5,300,006 - PS417_24410 0.25 -0.0 5,300,198 - PS417_24410 0.33 +0.9 5,300,198 - -0.9
Or see this region's nucleotide sequence