Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_18050 and PS417_18055 overlap by 4 nucleotides PS417_18055 and PS417_18060 overlap by 4 nucleotides PS417_18060 and PS417_18065 overlap by 4 nucleotides PS417_18065 and PS417_18070 overlap by 4 nucleotides PS417_18070 and PS417_18075 are separated by 7 nucleotides
PS417_18050: PS417_18050 - general secretion pathway protein GspL, at 3,933,520 to 3,934,512
_18050
PS417_18055: PS417_18055 - general secretion pathway protein GspK, at 3,934,509 to 3,935,210
_18055
PS417_18060: PS417_18060 - general secretion pathway protein GspJ, at 3,935,207 to 3,935,776
_18060
PS417_18065: PS417_18065 - general secretion pathway protein GspI, at 3,935,773 to 3,936,105
_18065
PS417_18070: PS417_18070 - general secretion pathway protein GspH, at 3,936,102 to 3,936,527
_18070
PS417_18075: PS417_18075 - general secretion pathway protein GspG, at 3,936,535 to 3,936,924
_18075
Position (kb) 3935
3936 Strain fitness (log2 ratio) -1
0
1
2 at 3934.566 kb on + strand at 3934.765 kb on + strand, within PS417_18055 at 3934.940 kb on - strand, within PS417_18055 at 3935.081 kb on + strand at 3935.646 kb on + strand, within PS417_18060 at 3935.646 kb on + strand, within PS417_18060 at 3935.730 kb on - strand at 3935.752 kb on + strand at 3936.214 kb on + strand, within PS417_18070 at 3936.215 kb on - strand at 3936.510 kb on - strand at 3936.596 kb on + strand, within PS417_18075 at 3936.597 kb on - strand, within PS417_18075 at 3936.686 kb on + strand, within PS417_18075 at 3936.687 kb on - strand, within PS417_18075 at 3936.715 kb on + strand, within PS417_18075 at 3936.716 kb on - strand, within PS417_18075 at 3936.716 kb on - strand, within PS417_18075
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 3,934,566 + +1.3 3,934,765 + PS417_18055 0.36 +1.2 3,934,940 - PS417_18055 0.61 +0.3 3,935,081 + +0.8 3,935,646 + PS417_18060 0.77 -0.9 3,935,646 + PS417_18060 0.77 -0.7 3,935,730 - -0.2 3,935,752 + -0.2 3,936,214 + PS417_18070 0.26 -0.1 3,936,215 - +2.1 3,936,510 - -0.9 3,936,596 + PS417_18075 0.16 +0.6 3,936,597 - PS417_18075 0.16 -0.5 3,936,686 + PS417_18075 0.39 +2.3 3,936,687 - PS417_18075 0.39 -0.7 3,936,715 + PS417_18075 0.46 +0.0 3,936,716 - PS417_18075 0.46 -0.0 3,936,716 - PS417_18075 0.46 +0.6
Or see this region's nucleotide sequence