Experiment: RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00505 and PS417_00510 are separated by 57 nucleotides PS417_00510 and PS417_00515 are separated by 211 nucleotides
PS417_00505: PS417_00505 - peptidase M16, at 100,094 to 101,476
_00505
PS417_00510: PS417_00510 - membrane protein, at 101,534 to 103,192
_00510
PS417_00515: PS417_00515 - membrane protein, at 103,404 to 104,171
_00515
Position (kb) 101
102
103
104 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 100.561 kb on - strand, within PS417_00505 at 100.561 kb on - strand, within PS417_00505 at 100.612 kb on - strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.629 kb on + strand, within PS417_00505 at 100.630 kb on - strand, within PS417_00505 at 101.398 kb on - strand at 101.398 kb on - strand at 101.451 kb on - strand at 101.476 kb on + strand at 101.477 kb on - strand at 101.507 kb on + strand at 101.508 kb on - strand at 101.560 kb on + strand at 101.563 kb on - strand at 101.604 kb on - strand at 101.607 kb on + strand at 101.607 kb on + strand at 101.607 kb on + strand at 101.608 kb on - strand at 101.608 kb on - strand at 101.608 kb on - strand at 102.348 kb on + strand, within PS417_00510 at 102.614 kb on + strand, within PS417_00510 at 103.150 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.253 kb on + strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.254 kb on - strand at 103.259 kb on + strand at 103.260 kb on - strand at 103.266 kb on + strand at 103.267 kb on - strand at 103.267 kb on - strand at 103.273 kb on + strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.274 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.307 kb on - strand at 103.310 kb on + strand at 103.310 kb on + strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.311 kb on - strand at 103.525 kb on + strand, within PS417_00515 at 103.525 kb on + strand, within PS417_00515 at 103.531 kb on + strand, within PS417_00515 at 103.708 kb on - strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.789 kb on + strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.790 kb on - strand, within PS417_00515 at 103.855 kb on + strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 103.856 kb on - strand, within PS417_00515 at 104.037 kb on - strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.048 kb on + strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515 at 104.049 kb on - strand, within PS417_00515
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_noCarbon with Supernatant; Trichoderma virens G41 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 0.25x remove 100,561 - PS417_00505 0.34 -1.1 100,561 - PS417_00505 0.34 -0.9 100,612 - PS417_00505 0.37 -0.3 100,629 + PS417_00505 0.39 -0.2 100,629 + PS417_00505 0.39 +1.2 100,630 - PS417_00505 0.39 -1.3 101,398 - -0.4 101,398 - -0.2 101,451 - -0.1 101,476 + +0.0 101,477 - +0.3 101,507 + +0.6 101,508 - -0.2 101,560 + +0.5 101,563 - +1.3 101,604 - +0.5 101,607 + +0.2 101,607 + -0.8 101,607 + +0.7 101,608 - +0.5 101,608 - -0.7 101,608 - -0.4 102,348 + PS417_00510 0.49 +0.8 102,614 + PS417_00510 0.65 +0.3 103,150 + +0.0 103,253 + +0.7 103,253 + +0.2 103,253 + -0.3 103,253 + -0.3 103,253 + -0.4 103,254 - +0.3 103,254 - +2.7 103,254 - +0.1 103,259 + -0.3 103,260 - -0.2 103,266 + -2.8 103,267 - +0.0 103,267 - +0.2 103,273 + +0.2 103,274 - -0.7 103,274 - -0.7 103,274 - -0.2 103,274 - -1.5 103,274 - -0.7 103,307 - +0.1 103,307 - -0.4 103,307 - -0.2 103,310 + +0.0 103,310 + -0.2 103,311 - +0.3 103,311 - +0.6 103,311 - -0.5 103,311 - -0.1 103,311 - -0.0 103,311 - +0.1 103,525 + PS417_00515 0.16 +0.5 103,525 + PS417_00515 0.16 -1.9 103,531 + PS417_00515 0.17 +1.2 103,708 - PS417_00515 0.40 -0.5 103,789 + PS417_00515 0.50 +0.3 103,789 + PS417_00515 0.50 +0.1 103,789 + PS417_00515 0.50 +1.2 103,790 - PS417_00515 0.50 -0.5 103,790 - PS417_00515 0.50 -0.1 103,790 - PS417_00515 0.50 -0.8 103,790 - PS417_00515 0.50 -0.4 103,790 - PS417_00515 0.50 +0.5 103,790 - PS417_00515 0.50 +0.5 103,790 - PS417_00515 0.50 -0.3 103,790 - PS417_00515 0.50 +0.6 103,855 + PS417_00515 0.59 -1.7 103,856 - PS417_00515 0.59 +1.0 103,856 - PS417_00515 0.59 +0.7 103,856 - PS417_00515 0.59 -0.3 104,037 - PS417_00515 0.82 -1.3 104,048 + PS417_00515 0.84 -1.9 104,048 + PS417_00515 0.84 +2.0 104,049 - PS417_00515 0.84 -0.1 104,049 - PS417_00515 0.84 +0.3 104,049 - PS417_00515 0.84 +0.1 104,049 - PS417_00515 0.84 -0.9 104,049 - PS417_00515 0.84 -1.4 104,049 - PS417_00515 0.84 +0.7
Or see this region's nucleotide sequence