Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0399 and Atu0400 are separated by 151 nucleotides Atu0400 and Atu0401 are separated by 99 nucleotides Atu0401 and Atu0402 are separated by 124 nucleotides
Atu0399: Atu0399 - dihydroorotase, at 393,648 to 394,685
Atu0399
Atu0400: Atu0400 - orotate phosphoribosyltransferase, at 394,837 to 395,535
Atu0400
Atu0401: Atu0401 - fructokinase, at 395,635 to 396,561
Atu0401
Atu0402: Atu0402 - hypothetical protein, at 396,686 to 397,651
Atu0402
Position (kb) 395
396
397 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 394.740 kb on - strand at 394.740 kb on - strand at 394.940 kb on - strand, within Atu0400 at 394.940 kb on - strand, within Atu0400 at 394.940 kb on - strand, within Atu0400 at 395.017 kb on - strand, within Atu0400 at 395.118 kb on - strand, within Atu0400 at 395.163 kb on + strand, within Atu0400 at 395.375 kb on - strand, within Atu0400 at 395.482 kb on + strand at 395.505 kb on - strand at 395.551 kb on + strand at 395.625 kb on - strand at 395.736 kb on - strand, within Atu0401 at 395.863 kb on + strand, within Atu0401 at 396.011 kb on - strand, within Atu0401 at 396.028 kb on + strand, within Atu0401 at 396.055 kb on - strand, within Atu0401 at 396.356 kb on - strand, within Atu0401 at 396.513 kb on + strand at 396.521 kb on - strand at 396.571 kb on - strand at 396.700 kb on + strand at 396.708 kb on - strand at 396.756 kb on + strand at 396.845 kb on - strand, within Atu0402 at 396.866 kb on - strand, within Atu0402 at 396.946 kb on + strand, within Atu0402 at 397.027 kb on + strand, within Atu0402 at 397.071 kb on + strand, within Atu0402 at 397.079 kb on - strand, within Atu0402 at 397.194 kb on + strand, within Atu0402 at 397.202 kb on - strand, within Atu0402 at 397.214 kb on - strand, within Atu0402 at 397.370 kb on + strand, within Atu0402 at 397.370 kb on + strand, within Atu0402 at 397.378 kb on - strand, within Atu0402 at 397.378 kb on - strand, within Atu0402 at 397.410 kb on - strand, within Atu0402 at 397.446 kb on + strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.527 kb on - strand, within Atu0402 at 397.561 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 394,740 - +0.4 394,740 - +0.3 394,940 - Atu0400 0.15 -2.9 394,940 - Atu0400 0.15 -1.8 394,940 - Atu0400 0.15 -0.5 395,017 - Atu0400 0.26 -1.6 395,118 - Atu0400 0.40 -0.2 395,163 + Atu0400 0.47 -2.5 395,375 - Atu0400 0.77 -2.5 395,482 + -2.7 395,505 - -0.4 395,551 + -0.3 395,625 - -0.7 395,736 - Atu0401 0.11 -2.2 395,863 + Atu0401 0.25 -4.1 396,011 - Atu0401 0.41 -3.9 396,028 + Atu0401 0.42 -2.3 396,055 - Atu0401 0.45 -4.4 396,356 - Atu0401 0.78 -2.2 396,513 + -3.9 396,521 - -3.6 396,571 - -1.9 396,700 + +0.1 396,708 - -0.8 396,756 + -0.7 396,845 - Atu0402 0.16 -0.0 396,866 - Atu0402 0.19 -0.3 396,946 + Atu0402 0.27 +0.4 397,027 + Atu0402 0.35 +0.6 397,071 + Atu0402 0.40 -0.1 397,079 - Atu0402 0.41 -0.1 397,194 + Atu0402 0.53 -1.1 397,202 - Atu0402 0.53 +0.2 397,214 - Atu0402 0.55 -0.1 397,370 + Atu0402 0.71 -0.2 397,370 + Atu0402 0.71 +0.6 397,378 - Atu0402 0.72 -0.1 397,378 - Atu0402 0.72 +0.5 397,410 - Atu0402 0.75 +0.1 397,446 + Atu0402 0.79 +0.2 397,527 - Atu0402 0.87 +0.7 397,527 - Atu0402 0.87 +0.2 397,527 - Atu0402 0.87 +0.0 397,527 - Atu0402 0.87 +0.3 397,561 - +0.0
Or see this region's nucleotide sequence