Experiment: Mannobiose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0346 and Atu0347 are separated by 7 nucleotides Atu0347 and Atu0348 overlap by 1 nucleotides Atu0348 and Atu0349 are separated by 103 nucleotides
Atu0346: Atu0346 - uridylyltransferase/uridylyl-removing enzyme UTase, at 339,637 to 342,465
Atu0346
Atu0347: Atu0347 - virulence factor MviN, at 342,473 to 344,062
Atu0347
Atu0348: Atu0348 - hypothetical protein, at 344,062 to 344,466
Atu0348
Atu0349: Atu0349 - tryptophan-tRNA ligase, at 344,570 to 345,634
Atu0349
Position (kb) 342
343
344
345 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 341.784 kb on + strand, within Atu0346 at 342.281 kb on + strand at 342.333 kb on + strand at 342.351 kb on + strand at 342.419 kb on + strand at 342.469 kb on + strand at 344.005 kb on + strand at 344.056 kb on + strand at 344.094 kb on + strand at 344.146 kb on + strand, within Atu0348 at 344.241 kb on - strand, within Atu0348 at 344.319 kb on - strand, within Atu0348 at 344.394 kb on + strand, within Atu0348 at 344.402 kb on - strand, within Atu0348 at 344.402 kb on - strand, within Atu0348 at 344.402 kb on - strand, within Atu0348 at 344.455 kb on - strand at 344.470 kb on - strand at 344.534 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mannobiose (C) remove 341,784 + Atu0346 0.76 -3.5 342,281 + -2.5 342,333 + -0.7 342,351 + -0.4 342,419 + +0.5 342,469 + -0.5 344,005 + -0.4 344,056 + +0.6 344,094 + -0.5 344,146 + Atu0348 0.21 +0.0 344,241 - Atu0348 0.44 +0.1 344,319 - Atu0348 0.63 -0.5 344,394 + Atu0348 0.82 -0.3 344,402 - Atu0348 0.84 +0.1 344,402 - Atu0348 0.84 -0.4 344,402 - Atu0348 0.84 -0.4 344,455 - -0.2 344,470 - +0.0 344,534 + +0.1
Or see this region's nucleotide sequence