Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4228 and Psyr_4229 are separated by 113 nucleotides Psyr_4229 and Psyr_4230 are separated by 89 nucleotides Psyr_4230 and Psyr_4231 overlap by 4 nucleotides
Psyr_4228: Psyr_4228 - transcriptional regulator, GntR family, at 5,035,648 to 5,036,397
_4228
Psyr_4229: Psyr_4229 - ABC transporter:ABC transporter, N-terminal, at 5,036,511 to 5,038,229
_4229
Psyr_4230: Psyr_4230 - Helix-turn-helix, Fis-type, at 5,038,319 to 5,038,882
_4230
Psyr_4231: Psyr_4231 - ATP-binding region, ATPase-like:Histidine kinase A, N-terminal, at 5,038,879 to 5,040,138
_4231
Position (kb) 5036
5037
5038
5039 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5 at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.565 kb on + strand at 5035.566 kb on - strand at 5035.585 kb on + strand at 5035.585 kb on + strand at 5035.586 kb on - strand at 5035.642 kb on + strand at 5035.643 kb on - strand at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.800 kb on + strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.801 kb on - strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.802 kb on + strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.803 kb on - strand, within Psyr_4228 at 5035.895 kb on + strand, within Psyr_4228 at 5036.025 kb on + strand, within Psyr_4228 at 5036.026 kb on - strand, within Psyr_4228 at 5036.026 kb on - strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.092 kb on + strand, within Psyr_4228 at 5036.314 kb on - strand, within Psyr_4228 at 5036.420 kb on + strand at 5036.437 kb on + strand at 5036.437 kb on + strand at 5036.437 kb on + strand at 5036.437 kb on + strand at 5036.438 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.452 kb on - strand at 5036.485 kb on + strand at 5036.486 kb on - strand at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.686 kb on + strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.687 kb on - strand, within Psyr_4229 at 5036.902 kb on + strand, within Psyr_4229 at 5036.902 kb on + strand, within Psyr_4229 at 5037.236 kb on - strand, within Psyr_4229 at 5037.328 kb on + strand, within Psyr_4229 at 5037.328 kb on + strand, within Psyr_4229 at 5037.329 kb on - strand, within Psyr_4229 at 5037.329 kb on - strand, within Psyr_4229 at 5037.376 kb on + strand, within Psyr_4229 at 5037.432 kb on - strand, within Psyr_4229 at 5037.432 kb on - strand, within Psyr_4229 at 5037.432 kb on - strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.650 kb on + strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.651 kb on - strand, within Psyr_4229 at 5037.652 kb on + strand, within Psyr_4229 at 5037.652 kb on + strand, within Psyr_4229 at 5037.652 kb on + strand, within Psyr_4229 at 5037.653 kb on - strand, within Psyr_4229 at 5037.844 kb on + strand, within Psyr_4229 at 5037.845 kb on - strand, within Psyr_4229 at 5037.845 kb on - strand, within Psyr_4229 at 5037.847 kb on + strand, within Psyr_4229 at 5037.847 kb on + strand, within Psyr_4229 at 5037.847 kb on + strand, within Psyr_4229 at 5037.847 kb on + strand, within Psyr_4229 at 5037.848 kb on - strand, within Psyr_4229 at 5037.848 kb on - strand, within Psyr_4229 at 5037.928 kb on + strand, within Psyr_4229 at 5037.980 kb on - strand, within Psyr_4229 at 5038.030 kb on + strand, within Psyr_4229 at 5038.030 kb on + strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.031 kb on - strand, within Psyr_4229 at 5038.173 kb on + strand at 5038.194 kb on - strand at 5038.211 kb on - strand at 5038.211 kb on - strand at 5038.211 kb on - strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.257 kb on + strand at 5038.258 kb on - strand at 5038.258 kb on - strand at 5038.258 kb on - strand at 5038.258 kb on - strand at 5038.258 kb on - strand at 5038.303 kb on + strand at 5038.304 kb on - strand at 5038.400 kb on - strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.400 kb on - strand, within Psyr_4230 at 5038.520 kb on + strand, within Psyr_4230 at 5038.521 kb on - strand, within Psyr_4230 at 5038.521 kb on - strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.551 kb on + strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.552 kb on - strand, within Psyr_4230 at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.826 kb on + strand at 5038.899 kb on + strand at 5038.950 kb on - strand at 5038.950 kb on - strand at 5038.950 kb on - strand at 5038.950 kb on - strand at 5039.028 kb on + strand, within Psyr_4231 at 5039.028 kb on + strand, within Psyr_4231 at 5039.029 kb on - strand, within Psyr_4231 at 5039.031 kb on + strand, within Psyr_4231 at 5039.031 kb on + strand, within Psyr_4231 at 5039.031 kb on + strand, within Psyr_4231
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 5,035,565 + +0.6 5,035,565 + +0.2 5,035,565 + -0.5 5,035,565 + -0.5 5,035,565 + -0.9 5,035,565 + -0.7 5,035,565 + +2.1 5,035,566 - +0.3 5,035,585 + +1.3 5,035,585 + +0.3 5,035,586 - +0.5 5,035,642 + -0.1 5,035,643 - -1.4 5,035,800 + Psyr_4228 0.20 -0.2 5,035,800 + Psyr_4228 0.20 -1.8 5,035,800 + Psyr_4228 0.20 +1.0 5,035,800 + Psyr_4228 0.20 +1.3 5,035,801 - Psyr_4228 0.20 +0.3 5,035,801 - Psyr_4228 0.20 +1.1 5,035,801 - Psyr_4228 0.20 +0.1 5,035,801 - Psyr_4228 0.20 -1.8 5,035,802 + Psyr_4228 0.21 -0.5 5,035,802 + Psyr_4228 0.21 -1.5 5,035,802 + Psyr_4228 0.21 -0.5 5,035,802 + Psyr_4228 0.21 -0.2 5,035,802 + Psyr_4228 0.21 +1.0 5,035,802 + Psyr_4228 0.21 +0.4 5,035,802 + Psyr_4228 0.21 +0.1 5,035,802 + Psyr_4228 0.21 -1.8 5,035,803 - Psyr_4228 0.21 +0.2 5,035,803 - Psyr_4228 0.21 -1.7 5,035,803 - Psyr_4228 0.21 +0.6 5,035,803 - Psyr_4228 0.21 +0.9 5,035,803 - Psyr_4228 0.21 -1.8 5,035,803 - Psyr_4228 0.21 -0.4 5,035,803 - Psyr_4228 0.21 +0.1 5,035,803 - Psyr_4228 0.21 -0.0 5,035,803 - Psyr_4228 0.21 +0.9 5,035,803 - Psyr_4228 0.21 +0.6 5,035,803 - Psyr_4228 0.21 +1.5 5,035,895 + Psyr_4228 0.33 +0.9 5,036,025 + Psyr_4228 0.50 -1.2 5,036,026 - Psyr_4228 0.50 -0.0 5,036,026 - Psyr_4228 0.50 -0.1 5,036,092 + Psyr_4228 0.59 -0.3 5,036,092 + Psyr_4228 0.59 -2.0 5,036,092 + Psyr_4228 0.59 -0.3 5,036,092 + Psyr_4228 0.59 +2.3 5,036,314 - Psyr_4228 0.89 +0.0 5,036,420 + -2.8 5,036,437 + -0.7 5,036,437 + +1.7 5,036,437 + +0.3 5,036,437 + -0.9 5,036,438 - -1.0 5,036,452 - +0.3 5,036,452 - +0.5 5,036,452 - -0.2 5,036,452 - -2.3 5,036,485 + +1.0 5,036,486 - -0.6 5,036,686 + Psyr_4229 0.10 +0.1 5,036,686 + Psyr_4229 0.10 -0.4 5,036,686 + Psyr_4229 0.10 +0.0 5,036,686 + Psyr_4229 0.10 +0.4 5,036,686 + Psyr_4229 0.10 +0.9 5,036,686 + Psyr_4229 0.10 +0.3 5,036,686 + Psyr_4229 0.10 -0.1 5,036,686 + Psyr_4229 0.10 +0.5 5,036,686 + Psyr_4229 0.10 -0.0 5,036,687 - Psyr_4229 0.10 +1.4 5,036,687 - Psyr_4229 0.10 -2.1 5,036,687 - Psyr_4229 0.10 -0.8 5,036,687 - Psyr_4229 0.10 +0.8 5,036,687 - Psyr_4229 0.10 -0.6 5,036,687 - Psyr_4229 0.10 +0.3 5,036,687 - Psyr_4229 0.10 -0.3 5,036,687 - Psyr_4229 0.10 -1.4 5,036,687 - Psyr_4229 0.10 -0.9 5,036,687 - Psyr_4229 0.10 -0.0 5,036,902 + Psyr_4229 0.23 +0.3 5,036,902 + Psyr_4229 0.23 +0.5 5,037,236 - Psyr_4229 0.42 -0.3 5,037,328 + Psyr_4229 0.48 -0.9 5,037,328 + Psyr_4229 0.48 +0.1 5,037,329 - Psyr_4229 0.48 -0.9 5,037,329 - Psyr_4229 0.48 -0.7 5,037,376 + Psyr_4229 0.50 -0.6 5,037,432 - Psyr_4229 0.54 +0.1 5,037,432 - Psyr_4229 0.54 -0.7 5,037,432 - Psyr_4229 0.54 -0.2 5,037,650 + Psyr_4229 0.66 +1.3 5,037,650 + Psyr_4229 0.66 -0.6 5,037,650 + Psyr_4229 0.66 -1.1 5,037,650 + Psyr_4229 0.66 -2.3 5,037,650 + Psyr_4229 0.66 +0.6 5,037,650 + Psyr_4229 0.66 -1.1 5,037,650 + Psyr_4229 0.66 -0.4 5,037,650 + Psyr_4229 0.66 +1.1 5,037,651 - Psyr_4229 0.66 +0.7 5,037,651 - Psyr_4229 0.66 +1.0 5,037,651 - Psyr_4229 0.66 +0.7 5,037,651 - Psyr_4229 0.66 +1.2 5,037,651 - Psyr_4229 0.66 +0.1 5,037,651 - Psyr_4229 0.66 +1.3 5,037,651 - Psyr_4229 0.66 -0.6 5,037,651 - Psyr_4229 0.66 +0.4 5,037,651 - Psyr_4229 0.66 +0.2 5,037,651 - Psyr_4229 0.66 +0.2 5,037,651 - Psyr_4229 0.66 +0.6 5,037,651 - Psyr_4229 0.66 -1.0 5,037,651 - Psyr_4229 0.66 -0.3 5,037,651 - Psyr_4229 0.66 +0.9 5,037,651 - Psyr_4229 0.66 -1.8 5,037,652 + Psyr_4229 0.66 +1.3 5,037,652 + Psyr_4229 0.66 +1.5 5,037,652 + Psyr_4229 0.66 +0.1 5,037,653 - Psyr_4229 0.66 +2.1 5,037,844 + Psyr_4229 0.78 -1.1 5,037,845 - Psyr_4229 0.78 +0.7 5,037,845 - Psyr_4229 0.78 -0.7 5,037,847 + Psyr_4229 0.78 -0.9 5,037,847 + Psyr_4229 0.78 +0.1 5,037,847 + Psyr_4229 0.78 +0.1 5,037,847 + Psyr_4229 0.78 -2.1 5,037,848 - Psyr_4229 0.78 -1.1 5,037,848 - Psyr_4229 0.78 -0.5 5,037,928 + Psyr_4229 0.82 -0.8 5,037,980 - Psyr_4229 0.85 -0.4 5,038,030 + Psyr_4229 0.88 -0.9 5,038,030 + Psyr_4229 0.88 +2.9 5,038,031 - Psyr_4229 0.88 +1.2 5,038,031 - Psyr_4229 0.88 -1.4 5,038,031 - Psyr_4229 0.88 +0.3 5,038,031 - Psyr_4229 0.88 -3.1 5,038,173 + +1.3 5,038,194 - -0.6 5,038,211 - -2.1 5,038,211 - +0.9 5,038,211 - +0.2 5,038,257 + +1.9 5,038,257 + +0.5 5,038,257 + +0.7 5,038,257 + +0.7 5,038,258 - -0.5 5,038,258 - -1.0 5,038,258 - -2.5 5,038,258 - -1.7 5,038,258 - -1.0 5,038,303 + -0.8 5,038,304 - -0.6 5,038,400 - Psyr_4230 0.14 -0.3 5,038,400 - Psyr_4230 0.14 +0.1 5,038,400 - Psyr_4230 0.14 -0.6 5,038,400 - Psyr_4230 0.14 +0.4 5,038,520 + Psyr_4230 0.36 +1.3 5,038,521 - Psyr_4230 0.36 -0.9 5,038,521 - Psyr_4230 0.36 -0.8 5,038,551 + Psyr_4230 0.41 +0.3 5,038,551 + Psyr_4230 0.41 -0.5 5,038,551 + Psyr_4230 0.41 +1.5 5,038,551 + Psyr_4230 0.41 +0.1 5,038,551 + Psyr_4230 0.41 +0.1 5,038,551 + Psyr_4230 0.41 +0.6 5,038,551 + Psyr_4230 0.41 +1.9 5,038,551 + Psyr_4230 0.41 +5.1 5,038,552 - Psyr_4230 0.41 -0.6 5,038,552 - Psyr_4230 0.41 +1.1 5,038,826 + -0.3 5,038,826 + +2.1 5,038,826 + +0.3 5,038,826 + +1.2 5,038,826 + -0.9 5,038,826 + +0.4 5,038,899 + +1.5 5,038,950 - -0.4 5,038,950 - -0.1 5,038,950 - -0.4 5,038,950 - -0.6 5,039,028 + Psyr_4231 0.12 -0.1 5,039,028 + Psyr_4231 0.12 +0.1 5,039,029 - Psyr_4231 0.12 +2.0 5,039,031 + Psyr_4231 0.12 +0.3 5,039,031 + Psyr_4231 0.12 +0.9 5,039,031 + Psyr_4231 0.12 -1.2
Or see this region's nucleotide sequence