Experiment: KB with Dimethyl Sulfoxide 1.25 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_4137 and Psyr_4138 overlap by 4 nucleotides Psyr_4138 and Psyr_4139 are separated by 10 nucleotides Psyr_4139 and Psyr_4140 overlap by 1 nucleotides Psyr_4140 and Psyr_4141 overlap by 1 nucleotides
Psyr_4137: Psyr_4137 - Sulfate transporter/antisigma-factor antagonist STAS, at 4,927,698 to 4,928,003
_4137
Psyr_4138: Psyr_4138 - Toluene tolerance, at 4,928,000 to 4,928,650
_4138
Psyr_4139: Psyr_4139 - Mce4/Rv3499c/MTV023.06c protein, at 4,928,661 to 4,929,128
_4139
Psyr_4140: Psyr_4140 - Protein of unknown function DUF140, at 4,929,128 to 4,929,925
_4140
Psyr_4141: Psyr_4141 - ABC transporter, at 4,929,925 to 4,930,734
_4141
Position (kb) 4928
4929
4930 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4927.741 kb on - strand, within Psyr_4137 at 4927.741 kb on - strand, within Psyr_4137 at 4928.033 kb on - strand at 4928.202 kb on + strand, within Psyr_4138 at 4928.202 kb on + strand, within Psyr_4138 at 4928.203 kb on - strand, within Psyr_4138 at 4928.203 kb on - strand, within Psyr_4138 at 4928.214 kb on + strand, within Psyr_4138 at 4928.331 kb on + strand, within Psyr_4138 at 4928.403 kb on + strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.478 kb on + strand, within Psyr_4138 at 4928.479 kb on - strand, within Psyr_4138 at 4928.479 kb on - strand, within Psyr_4138 at 4928.502 kb on + strand, within Psyr_4138 at 4928.503 kb on - strand, within Psyr_4138 at 4928.618 kb on + strand at 4928.642 kb on - strand at 4928.642 kb on - strand at 4928.797 kb on + strand, within Psyr_4139 at 4928.798 kb on - strand, within Psyr_4139 at 4928.901 kb on - strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.955 kb on + strand, within Psyr_4139 at 4928.956 kb on - strand, within Psyr_4139 at 4928.956 kb on - strand, within Psyr_4139 at 4928.985 kb on - strand, within Psyr_4139 at 4928.985 kb on - strand, within Psyr_4139 at 4929.001 kb on + strand, within Psyr_4139 at 4929.002 kb on - strand, within Psyr_4139 at 4929.008 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.010 kb on + strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.011 kb on - strand, within Psyr_4139 at 4929.160 kb on + strand at 4929.290 kb on + strand, within Psyr_4140 at 4929.291 kb on - strand, within Psyr_4140 at 4929.341 kb on - strand, within Psyr_4140 at 4929.372 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.489 kb on + strand, within Psyr_4140 at 4929.490 kb on - strand, within Psyr_4140 at 4929.672 kb on + strand, within Psyr_4140 at 4929.672 kb on + strand, within Psyr_4140 at 4929.862 kb on + strand at 4929.917 kb on - strand at 4929.940 kb on + strand at 4929.941 kb on - strand at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.017 kb on + strand, within Psyr_4141 at 4930.018 kb on - strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.088 kb on + strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141 at 4930.089 kb on - strand, within Psyr_4141
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol% remove 4,927,741 - Psyr_4137 0.14 -0.0 4,927,741 - Psyr_4137 0.14 -2.2 4,928,033 - -0.5 4,928,202 + Psyr_4138 0.31 -1.0 4,928,202 + Psyr_4138 0.31 -2.0 4,928,203 - Psyr_4138 0.31 -2.2 4,928,203 - Psyr_4138 0.31 -0.2 4,928,214 + Psyr_4138 0.33 -0.3 4,928,331 + Psyr_4138 0.51 +3.3 4,928,403 + Psyr_4138 0.62 -0.3 4,928,478 + Psyr_4138 0.73 -0.7 4,928,478 + Psyr_4138 0.73 -2.8 4,928,478 + Psyr_4138 0.73 -1.4 4,928,478 + Psyr_4138 0.73 +0.4 4,928,479 - Psyr_4138 0.74 +1.1 4,928,479 - Psyr_4138 0.74 -2.6 4,928,502 + Psyr_4138 0.77 +1.3 4,928,503 - Psyr_4138 0.77 -0.9 4,928,618 + -1.9 4,928,642 - -1.4 4,928,642 - -0.3 4,928,797 + Psyr_4139 0.29 -1.7 4,928,798 - Psyr_4139 0.29 -0.1 4,928,901 - Psyr_4139 0.51 -0.3 4,928,955 + Psyr_4139 0.63 -2.2 4,928,955 + Psyr_4139 0.63 +0.8 4,928,955 + Psyr_4139 0.63 -2.4 4,928,956 - Psyr_4139 0.63 +0.3 4,928,956 - Psyr_4139 0.63 -1.0 4,928,985 - Psyr_4139 0.69 -2.0 4,928,985 - Psyr_4139 0.69 -0.3 4,929,001 + Psyr_4139 0.73 -0.7 4,929,002 - Psyr_4139 0.73 -0.3 4,929,008 + Psyr_4139 0.74 -2.2 4,929,010 + Psyr_4139 0.75 +0.3 4,929,010 + Psyr_4139 0.75 -2.0 4,929,010 + Psyr_4139 0.75 +0.1 4,929,010 + Psyr_4139 0.75 -2.0 4,929,011 - Psyr_4139 0.75 -1.0 4,929,011 - Psyr_4139 0.75 -0.5 4,929,160 + -2.0 4,929,290 + Psyr_4140 0.20 -1.6 4,929,291 - Psyr_4140 0.20 -1.1 4,929,341 - Psyr_4140 0.27 -0.3 4,929,372 + Psyr_4140 0.31 -1.3 4,929,489 + Psyr_4140 0.45 -0.7 4,929,489 + Psyr_4140 0.45 -0.7 4,929,489 + Psyr_4140 0.45 -2.3 4,929,489 + Psyr_4140 0.45 -0.6 4,929,489 + Psyr_4140 0.45 -0.2 4,929,490 - Psyr_4140 0.45 -1.7 4,929,672 + Psyr_4140 0.68 -0.7 4,929,672 + Psyr_4140 0.68 -3.5 4,929,862 + +2.2 4,929,917 - -0.6 4,929,940 + -1.5 4,929,941 - -0.3 4,930,017 + Psyr_4141 0.11 -1.5 4,930,017 + Psyr_4141 0.11 -0.6 4,930,017 + Psyr_4141 0.11 -1.0 4,930,018 - Psyr_4141 0.11 -2.0 4,930,088 + Psyr_4141 0.20 +0.3 4,930,088 + Psyr_4141 0.20 +0.1 4,930,089 - Psyr_4141 0.20 -1.0 4,930,089 - Psyr_4141 0.20 +0.3 4,930,089 - Psyr_4141 0.20 -1.2 4,930,089 - Psyr_4141 0.20 -1.7
Or see this region's nucleotide sequence