Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_3364

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3363 and Psyr_3364 are separated by 144 nucleotidesPsyr_3364 and Psyr_3365 overlap by 12 nucleotides Psyr_3363: Psyr_3363 - Sulfate transporter/antisigma-factor antagonist STAS:Sulphate transporter, at 4,021,038 to 4,022,483 _3363 Psyr_3364: Psyr_3364 - Beta-lactamase, at 4,022,628 to 4,023,785 _3364 Psyr_3365: Psyr_3365 - Transcriptional regulator Ada / DNA-O6-methylguanine--protein-cysteine S-methyltransferase, at 4,023,774 to 4,024,928 _3365 Position (kb) 4022 4023 4024Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 4021.713 kb on + strand, within Psyr_3363at 4021.714 kb on - strand, within Psyr_3363at 4021.714 kb on - strand, within Psyr_3363at 4021.714 kb on - strand, within Psyr_3363at 4022.008 kb on + strand, within Psyr_3363at 4022.009 kb on - strand, within Psyr_3363at 4022.220 kb on + strand, within Psyr_3363at 4022.226 kb on + strand, within Psyr_3363at 4022.242 kb on + strand, within Psyr_3363at 4022.243 kb on - strand, within Psyr_3363at 4022.345 kb on + strandat 4022.366 kb on - strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.466 kb on + strandat 4022.467 kb on - strandat 4022.467 kb on - strandat 4022.467 kb on - strandat 4022.467 kb on - strandat 4022.468 kb on + strandat 4022.469 kb on - strandat 4022.531 kb on + strandat 4022.531 kb on + strandat 4022.532 kb on - strandat 4022.535 kb on - strandat 4022.535 kb on - strandat 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.808 kb on + strand, within Psyr_3364at 4022.809 kb on - strand, within Psyr_3364at 4022.809 kb on - strand, within Psyr_3364at 4022.814 kb on + strand, within Psyr_3364at 4022.814 kb on + strand, within Psyr_3364at 4022.814 kb on + strand, within Psyr_3364at 4022.814 kb on + strand, within Psyr_3364at 4022.814 kb on + strand, within Psyr_3364at 4022.815 kb on - strand, within Psyr_3364at 4022.858 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.961 kb on + strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.962 kb on - strand, within Psyr_3364at 4022.963 kb on + strand, within Psyr_3364at 4022.964 kb on - strand, within Psyr_3364at 4022.964 kb on - strand, within Psyr_3364at 4023.111 kb on + strand, within Psyr_3364at 4023.112 kb on - strand, within Psyr_3364at 4023.135 kb on + strand, within Psyr_3364at 4023.136 kb on - strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.249 kb on + strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.250 kb on - strand, within Psyr_3364at 4023.251 kb on + strand, within Psyr_3364at 4023.282 kb on + strand, within Psyr_3364at 4023.282 kb on + strand, within Psyr_3364at 4023.283 kb on - strand, within Psyr_3364at 4023.295 kb on - strand, within Psyr_3364at 4023.382 kb on + strand, within Psyr_3364at 4023.382 kb on + strand, within Psyr_3364at 4023.463 kb on - strand, within Psyr_3364at 4023.657 kb on + strand, within Psyr_3364at 4023.657 kb on + strand, within Psyr_3364at 4023.964 kb on - strand, within Psyr_3365at 4023.964 kb on - strand, within Psyr_3365at 4023.984 kb on - strand, within Psyr_3365at 4023.985 kb on + strand, within Psyr_3365at 4023.985 kb on + strand, within Psyr_3365at 4023.985 kb on + strand, within Psyr_3365at 4023.985 kb on + strand, within Psyr_3365at 4023.985 kb on + strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4023.986 kb on - strand, within Psyr_3365at 4024.390 kb on + strand, within Psyr_3365at 4024.391 kb on - strand, within Psyr_3365at 4024.391 kb on - strand, within Psyr_3365at 4024.410 kb on + strand, within Psyr_3365at 4024.411 kb on - strand, within Psyr_3365at 4024.446 kb on + strand, within Psyr_3365at 4024.462 kb on + strand, within Psyr_3365at 4024.463 kb on - strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.747 kb on + strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365at 4024.748 kb on - strand, within Psyr_3365

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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4,021,713 + Psyr_3363 0.47 -1.0
4,021,714 - Psyr_3363 0.47 +1.1
4,021,714 - Psyr_3363 0.47 -0.2
4,021,714 - Psyr_3363 0.47 -1.0
4,022,008 + Psyr_3363 0.67 +0.8
4,022,009 - Psyr_3363 0.67 -0.9
4,022,220 + Psyr_3363 0.82 -0.4
4,022,226 + Psyr_3363 0.82 -1.0
4,022,242 + Psyr_3363 0.83 -0.0
4,022,243 - Psyr_3363 0.83 -0.8
4,022,345 + -0.7
4,022,366 - +1.9
4,022,466 + -0.1
4,022,466 + +0.1
4,022,466 + -0.4
4,022,466 + -0.9
4,022,466 + -1.0
4,022,466 + -0.2
4,022,467 - +0.7
4,022,467 - -0.7
4,022,467 - +0.6
4,022,467 - +0.7
4,022,468 + -0.7
4,022,469 - +0.0
4,022,531 + +0.8
4,022,531 + +0.7
4,022,532 - +0.6
4,022,535 - -0.1
4,022,535 - -1.0
4,022,808 + Psyr_3364 0.16 +0.1
4,022,808 + Psyr_3364 0.16 -0.4
4,022,808 + Psyr_3364 0.16 -0.5
4,022,808 + Psyr_3364 0.16 -0.4
4,022,808 + Psyr_3364 0.16 -1.9
4,022,808 + Psyr_3364 0.16 +0.7
4,022,809 - Psyr_3364 0.16 +0.5
4,022,809 - Psyr_3364 0.16 -1.2
4,022,814 + Psyr_3364 0.16 +0.4
4,022,814 + Psyr_3364 0.16 +0.7
4,022,814 + Psyr_3364 0.16 +0.9
4,022,814 + Psyr_3364 0.16 +0.5
4,022,814 + Psyr_3364 0.16 +0.8
4,022,815 - Psyr_3364 0.16 +0.5
4,022,858 + Psyr_3364 0.20 +0.3
4,022,961 + Psyr_3364 0.29 -1.2
4,022,961 + Psyr_3364 0.29 -0.5
4,022,961 + Psyr_3364 0.29 +0.7
4,022,961 + Psyr_3364 0.29 +4.0
4,022,961 + Psyr_3364 0.29 -0.1
4,022,961 + Psyr_3364 0.29 -0.2
4,022,961 + Psyr_3364 0.29 +0.3
4,022,961 + Psyr_3364 0.29 +1.1
4,022,961 + Psyr_3364 0.29 +0.4
4,022,961 + Psyr_3364 0.29 -0.1
4,022,961 + Psyr_3364 0.29 -1.9
4,022,961 + Psyr_3364 0.29 -0.7
4,022,961 + Psyr_3364 0.29 +2.3
4,022,961 + Psyr_3364 0.29 -2.6
4,022,962 - Psyr_3364 0.29 -0.0
4,022,962 - Psyr_3364 0.29 -0.7
4,022,962 - Psyr_3364 0.29 -0.9
4,022,962 - Psyr_3364 0.29 -0.5
4,022,962 - Psyr_3364 0.29 +0.6
4,022,962 - Psyr_3364 0.29 -1.0
4,022,962 - Psyr_3364 0.29 -0.4
4,022,962 - Psyr_3364 0.29 +1.1
4,022,962 - Psyr_3364 0.29 -0.2
4,022,962 - Psyr_3364 0.29 +0.5
4,022,962 - Psyr_3364 0.29 -0.5
4,022,962 - Psyr_3364 0.29 +0.1
4,022,963 + Psyr_3364 0.29 +1.3
4,022,964 - Psyr_3364 0.29 -0.5
4,022,964 - Psyr_3364 0.29 -0.3
4,023,111 + Psyr_3364 0.42 +0.1
4,023,112 - Psyr_3364 0.42 +1.0
4,023,135 + Psyr_3364 0.44 +0.8
4,023,136 - Psyr_3364 0.44 -1.8
4,023,249 + Psyr_3364 0.54 -1.4
4,023,249 + Psyr_3364 0.54 -0.3
4,023,249 + Psyr_3364 0.54 +0.7
4,023,249 + Psyr_3364 0.54 -0.0
4,023,249 + Psyr_3364 0.54 -1.0
4,023,249 + Psyr_3364 0.54 +2.5
4,023,249 + Psyr_3364 0.54 +0.8
4,023,249 + Psyr_3364 0.54 +0.1
4,023,249 + Psyr_3364 0.54 -1.5
4,023,249 + Psyr_3364 0.54 -0.2
4,023,249 + Psyr_3364 0.54 -0.4
4,023,249 + Psyr_3364 0.54 +2.4
4,023,250 - Psyr_3364 0.54 +0.8
4,023,250 - Psyr_3364 0.54 +0.0
4,023,250 - Psyr_3364 0.54 -0.3
4,023,250 - Psyr_3364 0.54 +0.9
4,023,250 - Psyr_3364 0.54 +0.1
4,023,250 - Psyr_3364 0.54 -1.1
4,023,250 - Psyr_3364 0.54 +0.8
4,023,250 - Psyr_3364 0.54 -0.3
4,023,250 - Psyr_3364 0.54 -0.3
4,023,250 - Psyr_3364 0.54 -0.2
4,023,250 - Psyr_3364 0.54 +0.4
4,023,250 - Psyr_3364 0.54 +2.4
4,023,251 + Psyr_3364 0.54 -0.9
4,023,282 + Psyr_3364 0.56 -1.5
4,023,282 + Psyr_3364 0.56 +0.5
4,023,283 - Psyr_3364 0.57 -0.1
4,023,295 - Psyr_3364 0.58 -1.7
4,023,382 + Psyr_3364 0.65 -0.9
4,023,382 + Psyr_3364 0.65 -0.8
4,023,463 - Psyr_3364 0.72 +0.4
4,023,657 + Psyr_3364 0.89 +0.3
4,023,657 + Psyr_3364 0.89 -1.2
4,023,964 - Psyr_3365 0.16 +0.1
4,023,964 - Psyr_3365 0.16 -0.3
4,023,984 - Psyr_3365 0.18 +0.5
4,023,985 + Psyr_3365 0.18 -0.5
4,023,985 + Psyr_3365 0.18 -0.2
4,023,985 + Psyr_3365 0.18 -0.9
4,023,985 + Psyr_3365 0.18 -0.2
4,023,985 + Psyr_3365 0.18 +0.5
4,023,986 - Psyr_3365 0.18 +0.1
4,023,986 - Psyr_3365 0.18 +0.8
4,023,986 - Psyr_3365 0.18 -0.9
4,023,986 - Psyr_3365 0.18 +0.7
4,024,390 + Psyr_3365 0.53 +0.6
4,024,391 - Psyr_3365 0.53 -1.2
4,024,391 - Psyr_3365 0.53 +0.5
4,024,410 + Psyr_3365 0.55 +0.7
4,024,411 - Psyr_3365 0.55 +0.9
4,024,446 + Psyr_3365 0.58 +1.1
4,024,462 + Psyr_3365 0.60 -0.1
4,024,463 - Psyr_3365 0.60 -0.4
4,024,747 + Psyr_3365 0.84 +3.1
4,024,747 + Psyr_3365 0.84 +0.6
4,024,747 + Psyr_3365 0.84 -0.1
4,024,747 + Psyr_3365 0.84 -1.5
4,024,747 + Psyr_3365 0.84 -0.4
4,024,748 - Psyr_3365 0.84 -0.1
4,024,748 - Psyr_3365 0.84 -0.9
4,024,748 - Psyr_3365 0.84 +0.4
4,024,748 - Psyr_3365 0.84 -2.8
4,024,748 - Psyr_3365 0.84 +2.5

Or see this region's nucleotide sequence