Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1248

Experiment: KB with Dimethyl Sulfoxide 1.25 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1247 and Psyr_1248 are separated by 3 nucleotidesPsyr_1248 and Psyr_1249 are separated by 22 nucleotides Psyr_1247: Psyr_1247 - conserved hypothetical protein, at 1,402,337 to 1,403,341 _1247 Psyr_1248: Psyr_1248 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, at 1,403,345 to 1,404,454 _1248 Psyr_1249: Psyr_1249 - histidyl-tRNA synthetase, at 1,404,477 to 1,405,766 _1249 Position (kb) 1403 1404 1405Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1402.513 kb on + strand, within Psyr_1247at 1402.513 kb on + strand, within Psyr_1247at 1402.529 kb on + strand, within Psyr_1247at 1402.529 kb on + strand, within Psyr_1247at 1402.857 kb on + strand, within Psyr_1247at 1403.118 kb on + strand, within Psyr_1247at 1403.270 kb on + strandat 1403.270 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.292 kb on + strandat 1403.331 kb on + strandat 1404.482 kb on + strandat 1404.482 kb on + strandat 1404.582 kb on + strandat 1404.582 kb on + strandat 1404.678 kb on + strand, within Psyr_1249at 1404.678 kb on + strand, within Psyr_1249at 1404.678 kb on + strand, within Psyr_1249at 1404.798 kb on + strand, within Psyr_1249at 1405.029 kb on + strand, within Psyr_1249at 1405.029 kb on + strand, within Psyr_1249at 1405.230 kb on + strand, within Psyr_1249at 1405.230 kb on + strand, within Psyr_1249

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Dimethyl Sulfoxide 1.25 vol%
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1,402,513 + Psyr_1247 0.18 +0.3
1,402,513 + Psyr_1247 0.18 -1.2
1,402,529 + Psyr_1247 0.19 -2.7
1,402,529 + Psyr_1247 0.19 -1.5
1,402,857 + Psyr_1247 0.52 -0.3
1,403,118 + Psyr_1247 0.78 +0.5
1,403,270 + -1.7
1,403,270 + -0.4
1,403,292 + -0.5
1,403,292 + -0.8
1,403,292 + -0.2
1,403,292 + +0.6
1,403,292 + -0.1
1,403,292 + +0.4
1,403,292 + -0.0
1,403,331 + -2.2
1,404,482 + -1.3
1,404,482 + +0.1
1,404,582 + -2.2
1,404,582 + -0.2
1,404,678 + Psyr_1249 0.16 -4.0
1,404,678 + Psyr_1249 0.16 -2.3
1,404,678 + Psyr_1249 0.16 -2.0
1,404,798 + Psyr_1249 0.25 -0.0
1,405,029 + Psyr_1249 0.43 -0.8
1,405,029 + Psyr_1249 0.43 -0.7
1,405,230 + Psyr_1249 0.58 +0.3
1,405,230 + Psyr_1249 0.58 +2.5

Or see this region's nucleotide sequence