Experiment: Lactitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3496 and Atu3497 are separated by 180 nucleotides Atu3497 and Atu3498 are separated by 69 nucleotides Atu3498 and Atu3500 are separated by 527 nucleotides
Atu3496: Atu3496 - hypothetical protein, at 547,913 to 548,419
Atu3496
Atu3497: Atu3497 - hypothetical protein, at 548,600 to 548,947
Atu3497
Atu3498: Atu3498 - aldehyde dehydrogenase, at 549,017 to 550,453
Atu3498
Atu3500: Atu3500 - hypothetical protein, at 550,981 to 551,793
Atu3500
Position (kb) 549
550
551 Strain fitness (log2 ratio) -2
-1
0
1 at 548.113 kb on - strand, within Atu3496 at 548.232 kb on - strand, within Atu3496 at 548.404 kb on - strand at 548.624 kb on - strand at 548.827 kb on - strand, within Atu3497 at 548.907 kb on - strand, within Atu3497 at 548.988 kb on + strand at 548.988 kb on + strand at 548.988 kb on + strand at 548.998 kb on + strand at 549.009 kb on - strand at 549.025 kb on - strand at 549.030 kb on - strand at 549.061 kb on + strand at 549.183 kb on + strand, within Atu3498 at 549.243 kb on + strand, within Atu3498 at 549.251 kb on - strand, within Atu3498 at 549.273 kb on - strand, within Atu3498 at 549.298 kb on + strand, within Atu3498 at 549.381 kb on + strand, within Atu3498 at 549.389 kb on - strand, within Atu3498 at 549.389 kb on - strand, within Atu3498 at 549.391 kb on + strand, within Atu3498 at 549.495 kb on + strand, within Atu3498 at 549.529 kb on + strand, within Atu3498 at 549.622 kb on - strand, within Atu3498 at 549.628 kb on + strand, within Atu3498 at 549.628 kb on + strand, within Atu3498 at 549.636 kb on - strand, within Atu3498 at 549.722 kb on + strand, within Atu3498 at 549.775 kb on - strand, within Atu3498 at 549.778 kb on + strand, within Atu3498 at 549.883 kb on - strand, within Atu3498 at 549.901 kb on - strand, within Atu3498 at 549.923 kb on - strand, within Atu3498 at 549.966 kb on + strand, within Atu3498 at 549.966 kb on + strand, within Atu3498 at 549.966 kb on + strand, within Atu3498 at 550.118 kb on + strand, within Atu3498 at 550.270 kb on + strand, within Atu3498 at 550.278 kb on - strand, within Atu3498 at 550.293 kb on + strand, within Atu3498 at 550.320 kb on + strand at 550.328 kb on - strand at 550.335 kb on + strand at 550.336 kb on - strand at 550.372 kb on + strand at 550.409 kb on + strand at 550.417 kb on - strand at 550.417 kb on - strand at 550.417 kb on - strand at 550.551 kb on - strand at 550.577 kb on - strand at 550.605 kb on + strand at 550.618 kb on + strand at 550.634 kb on + strand at 550.642 kb on - strand at 550.647 kb on - strand at 550.768 kb on + strand at 550.771 kb on - strand at 550.776 kb on - strand at 550.776 kb on - strand at 550.776 kb on - strand at 550.776 kb on - strand at 550.811 kb on - strand at 550.862 kb on - strand at 550.865 kb on + strand at 550.947 kb on - strand at 550.995 kb on - strand at 551.031 kb on - strand at 551.176 kb on + strand, within Atu3500 at 551.176 kb on + strand, within Atu3500 at 551.179 kb on - strand, within Atu3500 at 551.225 kb on - strand, within Atu3500 at 551.392 kb on + strand, within Atu3500 at 551.400 kb on - strand, within Atu3500 at 551.400 kb on - strand, within Atu3500 at 551.436 kb on - strand, within Atu3500
Per-strain Table
Position Strand Gene LocusTag Fraction Lactitol (C) remove 548,113 - Atu3496 0.39 -0.9 548,232 - Atu3496 0.63 -0.4 548,404 - -0.4 548,624 - -0.6 548,827 - Atu3497 0.65 +1.3 548,907 - Atu3497 0.88 -0.1 548,988 + -0.0 548,988 + +0.5 548,988 + +0.2 548,998 + -0.7 549,009 - -0.1 549,025 - +0.4 549,030 - -0.1 549,061 + -0.9 549,183 + Atu3498 0.12 -1.1 549,243 + Atu3498 0.16 +0.1 549,251 - Atu3498 0.16 -0.9 549,273 - Atu3498 0.18 -0.4 549,298 + Atu3498 0.20 -0.1 549,381 + Atu3498 0.25 -0.8 549,389 - Atu3498 0.26 -0.6 549,389 - Atu3498 0.26 -0.1 549,391 + Atu3498 0.26 +0.7 549,495 + Atu3498 0.33 -0.1 549,529 + Atu3498 0.36 -0.3 549,622 - Atu3498 0.42 -0.3 549,628 + Atu3498 0.43 +0.2 549,628 + Atu3498 0.43 -1.2 549,636 - Atu3498 0.43 +0.1 549,722 + Atu3498 0.49 +0.9 549,775 - Atu3498 0.53 +0.0 549,778 + Atu3498 0.53 -0.7 549,883 - Atu3498 0.60 -0.2 549,901 - Atu3498 0.62 -0.2 549,923 - Atu3498 0.63 -0.6 549,966 + Atu3498 0.66 +0.3 549,966 + Atu3498 0.66 +0.2 549,966 + Atu3498 0.66 +0.0 550,118 + Atu3498 0.77 -0.2 550,270 + Atu3498 0.87 -0.2 550,278 - Atu3498 0.88 -0.0 550,293 + Atu3498 0.89 -0.0 550,320 + -0.5 550,328 - -0.4 550,335 + +0.1 550,336 - +0.4 550,372 + -0.1 550,409 + +0.1 550,417 - -0.4 550,417 - +0.1 550,417 - -0.4 550,551 - +0.1 550,577 - +0.3 550,605 + -0.2 550,618 + +0.7 550,634 + -0.1 550,642 - -0.1 550,647 - +0.3 550,768 + +0.1 550,771 - -0.1 550,776 - +1.2 550,776 - -2.0 550,776 - +0.2 550,776 - -0.3 550,811 - +0.0 550,862 - +1.0 550,865 + -0.6 550,947 - -0.1 550,995 - +0.1 551,031 - +0.3 551,176 + Atu3500 0.24 +0.2 551,176 + Atu3500 0.24 -0.1 551,179 - Atu3500 0.24 +0.2 551,225 - Atu3500 0.30 +0.5 551,392 + Atu3500 0.51 +0.6 551,400 - Atu3500 0.52 +0.1 551,400 - Atu3500 0.52 +0.2 551,436 - Atu3500 0.56 +0.5
Or see this region's nucleotide sequence