Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1697

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1695 and Psyr_1696 are separated by 13 nucleotidesPsyr_1696 and Psyr_1697 are separated by 27 nucleotidesPsyr_1697 and Psyr_1698 are separated by 11 nucleotides Psyr_1695: Psyr_1695 - conserved hypothetical protein, at 1,902,902 to 1,903,567 _1695 Psyr_1696: Psyr_1696 - Protein of unknown function DUF350, at 1,903,581 to 1,904,006 _1696 Psyr_1697: Psyr_1697 - conserved hypothetical protein, at 1,904,034 to 1,904,780 _1697 Psyr_1698: Psyr_1698 - Glutathionylspermidine synthase, at 1,904,792 to 1,905,949 _1698 Position (kb) 1904 1905Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 1903.102 kb on + strand, within Psyr_1695at 1903.102 kb on + strand, within Psyr_1695at 1903.139 kb on + strand, within Psyr_1695at 1903.158 kb on - strand, within Psyr_1695at 1903.200 kb on + strand, within Psyr_1695at 1903.200 kb on + strand, within Psyr_1695at 1903.200 kb on + strand, within Psyr_1695at 1903.200 kb on + strand, within Psyr_1695at 1903.201 kb on - strand, within Psyr_1695at 1903.224 kb on - strand, within Psyr_1695at 1903.305 kb on - strand, within Psyr_1695at 1903.407 kb on - strand, within Psyr_1695at 1903.485 kb on + strand, within Psyr_1695at 1903.534 kb on - strandat 1903.534 kb on - strandat 1903.534 kb on - strandat 1903.598 kb on + strandat 1903.598 kb on + strandat 1903.598 kb on + strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.599 kb on - strandat 1903.622 kb on - strandat 1903.622 kb on - strandat 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.638 kb on + strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.639 kb on - strand, within Psyr_1696at 1903.683 kb on + strand, within Psyr_1696at 1903.683 kb on + strand, within Psyr_1696at 1903.683 kb on + strand, within Psyr_1696at 1903.684 kb on - strand, within Psyr_1696at 1903.684 kb on - strand, within Psyr_1696at 1903.790 kb on + strand, within Psyr_1696at 1903.796 kb on + strand, within Psyr_1696at 1903.797 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.804 kb on - strand, within Psyr_1696at 1903.941 kb on + strand, within Psyr_1696at 1903.941 kb on + strand, within Psyr_1696at 1903.941 kb on + strand, within Psyr_1696at 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.042 kb on + strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.043 kb on - strandat 1904.059 kb on + strandat 1904.183 kb on + strand, within Psyr_1697at 1904.183 kb on + strand, within Psyr_1697at 1904.183 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.199 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.241 kb on + strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.242 kb on - strand, within Psyr_1697at 1904.283 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.310 kb on + strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.311 kb on - strand, within Psyr_1697at 1904.318 kb on + strand, within Psyr_1697at 1904.494 kb on - strand, within Psyr_1697at 1904.508 kb on + strand, within Psyr_1697at 1904.535 kb on + strand, within Psyr_1697at 1904.535 kb on + strand, within Psyr_1697at 1904.538 kb on + strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.539 kb on - strand, within Psyr_1697at 1904.623 kb on - strand, within Psyr_1697at 1904.901 kb on - strandat 1904.903 kb on + strandat 1904.903 kb on + strandat 1904.903 kb on + strandat 1905.135 kb on - strand, within Psyr_1698at 1905.309 kb on - strand, within Psyr_1698at 1905.400 kb on + strand, within Psyr_1698at 1905.500 kb on - strand, within Psyr_1698at 1905.589 kb on + strand, within Psyr_1698at 1905.698 kb on + strand, within Psyr_1698at 1905.770 kb on + strand, within Psyr_1698at 1905.771 kb on - strand, within Psyr_1698at 1905.771 kb on - strand, within Psyr_1698

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,903,102 + Psyr_1695 0.30 +1.4
1,903,102 + Psyr_1695 0.30 -0.9
1,903,139 + Psyr_1695 0.36 -1.0
1,903,158 - Psyr_1695 0.38 -2.8
1,903,200 + Psyr_1695 0.45 -0.6
1,903,200 + Psyr_1695 0.45 -0.0
1,903,200 + Psyr_1695 0.45 +1.3
1,903,200 + Psyr_1695 0.45 -0.3
1,903,201 - Psyr_1695 0.45 -0.3
1,903,224 - Psyr_1695 0.48 -0.9
1,903,305 - Psyr_1695 0.61 +1.4
1,903,407 - Psyr_1695 0.76 -1.1
1,903,485 + Psyr_1695 0.88 +0.6
1,903,534 - -0.9
1,903,534 - -1.6
1,903,534 - -2.9
1,903,598 + +0.9
1,903,598 + +0.8
1,903,598 + -0.0
1,903,599 - +0.3
1,903,599 - -1.3
1,903,599 - +0.7
1,903,599 - -1.3
1,903,622 - +1.9
1,903,622 - -0.4
1,903,638 + Psyr_1696 0.13 +1.0
1,903,638 + Psyr_1696 0.13 +0.1
1,903,638 + Psyr_1696 0.13 +1.4
1,903,638 + Psyr_1696 0.13 -0.5
1,903,638 + Psyr_1696 0.13 -0.2
1,903,638 + Psyr_1696 0.13 -0.5
1,903,638 + Psyr_1696 0.13 +0.1
1,903,638 + Psyr_1696 0.13 +0.4
1,903,638 + Psyr_1696 0.13 +0.1
1,903,638 + Psyr_1696 0.13 +1.1
1,903,638 + Psyr_1696 0.13 -0.5
1,903,638 + Psyr_1696 0.13 -0.2
1,903,638 + Psyr_1696 0.13 +2.7
1,903,639 - Psyr_1696 0.14 +0.4
1,903,639 - Psyr_1696 0.14 +1.9
1,903,639 - Psyr_1696 0.14 -0.5
1,903,639 - Psyr_1696 0.14 +0.8
1,903,639 - Psyr_1696 0.14 -1.1
1,903,639 - Psyr_1696 0.14 +0.5
1,903,639 - Psyr_1696 0.14 +1.5
1,903,639 - Psyr_1696 0.14 -0.1
1,903,639 - Psyr_1696 0.14 -0.1
1,903,639 - Psyr_1696 0.14 +1.8
1,903,639 - Psyr_1696 0.14 -0.1
1,903,639 - Psyr_1696 0.14 +1.4
1,903,639 - Psyr_1696 0.14 +0.6
1,903,639 - Psyr_1696 0.14 +0.2
1,903,639 - Psyr_1696 0.14 -0.1
1,903,639 - Psyr_1696 0.14 +1.6
1,903,683 + Psyr_1696 0.24 +1.7
1,903,683 + Psyr_1696 0.24 +1.1
1,903,683 + Psyr_1696 0.24 -0.2
1,903,684 - Psyr_1696 0.24 -0.1
1,903,684 - Psyr_1696 0.24 +1.9
1,903,790 + Psyr_1696 0.49 +2.7
1,903,796 + Psyr_1696 0.50 +0.6
1,903,797 - Psyr_1696 0.51 -2.0
1,903,804 - Psyr_1696 0.52 +1.5
1,903,804 - Psyr_1696 0.52 -0.8
1,903,941 + Psyr_1696 0.85 -1.7
1,903,941 + Psyr_1696 0.85 -0.5
1,903,941 + Psyr_1696 0.85 +0.5
1,904,042 + -0.9
1,904,042 + +2.1
1,904,042 + -1.0
1,904,042 + -1.6
1,904,042 + +0.5
1,904,042 + -0.6
1,904,042 + -0.9
1,904,042 + +0.1
1,904,043 - -0.6
1,904,043 - +0.9
1,904,043 - -1.4
1,904,043 - -0.7
1,904,043 - -1.1
1,904,059 + -0.1
1,904,183 + Psyr_1697 0.20 -0.7
1,904,183 + Psyr_1697 0.20 -0.4
1,904,183 + Psyr_1697 0.20 -0.9
1,904,199 + Psyr_1697 0.22 +0.0
1,904,199 + Psyr_1697 0.22 +1.3
1,904,199 + Psyr_1697 0.22 +1.4
1,904,199 + Psyr_1697 0.22 -1.3
1,904,199 + Psyr_1697 0.22 +0.5
1,904,199 + Psyr_1697 0.22 -0.1
1,904,199 + Psyr_1697 0.22 -0.2
1,904,241 + Psyr_1697 0.28 -1.2
1,904,241 + Psyr_1697 0.28 +0.4
1,904,241 + Psyr_1697 0.28 -0.1
1,904,241 + Psyr_1697 0.28 +1.6
1,904,241 + Psyr_1697 0.28 +0.7
1,904,241 + Psyr_1697 0.28 +1.5
1,904,242 - Psyr_1697 0.28 -1.8
1,904,242 - Psyr_1697 0.28 -0.3
1,904,242 - Psyr_1697 0.28 -1.2
1,904,242 - Psyr_1697 0.28 -0.9
1,904,283 + Psyr_1697 0.33 -0.2
1,904,310 + Psyr_1697 0.37 -0.1
1,904,310 + Psyr_1697 0.37 -0.6
1,904,310 + Psyr_1697 0.37 +1.9
1,904,310 + Psyr_1697 0.37 -1.0
1,904,310 + Psyr_1697 0.37 +1.1
1,904,310 + Psyr_1697 0.37 +1.2
1,904,310 + Psyr_1697 0.37 -0.4
1,904,310 + Psyr_1697 0.37 -0.3
1,904,311 - Psyr_1697 0.37 -0.6
1,904,311 - Psyr_1697 0.37 +2.2
1,904,311 - Psyr_1697 0.37 +0.1
1,904,311 - Psyr_1697 0.37 +0.2
1,904,311 - Psyr_1697 0.37 +4.6
1,904,311 - Psyr_1697 0.37 -1.1
1,904,311 - Psyr_1697 0.37 -0.7
1,904,311 - Psyr_1697 0.37 -0.9
1,904,311 - Psyr_1697 0.37 +0.2
1,904,318 + Psyr_1697 0.38 +0.7
1,904,494 - Psyr_1697 0.62 +1.5
1,904,508 + Psyr_1697 0.63 +0.3
1,904,535 + Psyr_1697 0.67 -0.5
1,904,535 + Psyr_1697 0.67 -0.1
1,904,538 + Psyr_1697 0.67 +0.7
1,904,539 - Psyr_1697 0.68 -0.6
1,904,539 - Psyr_1697 0.68 +0.9
1,904,539 - Psyr_1697 0.68 -0.7
1,904,539 - Psyr_1697 0.68 -0.3
1,904,623 - Psyr_1697 0.79 +0.8
1,904,901 - +0.2
1,904,903 + -0.4
1,904,903 + -1.3
1,904,903 + +1.4
1,905,135 - Psyr_1698 0.30 +0.1
1,905,309 - Psyr_1698 0.45 -1.9
1,905,400 + Psyr_1698 0.53 +0.8
1,905,500 - Psyr_1698 0.61 +3.1
1,905,589 + Psyr_1698 0.69 +1.3
1,905,698 + Psyr_1698 0.78 -0.4
1,905,770 + Psyr_1698 0.84 +1.0
1,905,771 - Psyr_1698 0.85 -0.1
1,905,771 - Psyr_1698 0.85 -1.0

Or see this region's nucleotide sequence