Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_1693 and Psyr_1694 are separated by 30 nucleotides Psyr_1694 and Psyr_1695 are separated by 84 nucleotides Psyr_1695 and Psyr_1696 are separated by 13 nucleotides Psyr_1696 and Psyr_1697 are separated by 27 nucleotides
Psyr_1693: Psyr_1693 - PspA/IM30, at 1,901,525 to 1,902,232
_1693
Psyr_1694: Psyr_1694 - Rhomboid-like protein, at 1,902,263 to 1,902,817
_1694
Psyr_1695: Psyr_1695 - conserved hypothetical protein, at 1,902,902 to 1,903,567
_1695
Psyr_1696: Psyr_1696 - Protein of unknown function DUF350, at 1,903,581 to 1,904,006
_1696
Psyr_1697: Psyr_1697 - conserved hypothetical protein, at 1,904,034 to 1,904,780
_1697
Position (kb) 1902
1903
1904 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 1902.189 kb on + strand at 1902.189 kb on + strand at 1902.190 kb on - strand at 1902.190 kb on - strand at 1902.575 kb on - strand, within Psyr_1694 at 1902.575 kb on - strand, within Psyr_1694 at 1902.617 kb on + strand, within Psyr_1694 at 1902.617 kb on + strand, within Psyr_1694 at 1902.745 kb on + strand, within Psyr_1694 at 1902.745 kb on + strand, within Psyr_1694 at 1902.746 kb on - strand, within Psyr_1694 at 1902.866 kb on + strand at 1902.866 kb on + strand at 1902.866 kb on + strand at 1902.866 kb on + strand at 1902.866 kb on + strand at 1902.867 kb on - strand at 1902.867 kb on - strand at 1902.867 kb on - strand at 1902.867 kb on - strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.868 kb on + strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.869 kb on - strand at 1902.870 kb on + strand at 1902.870 kb on + strand at 1902.870 kb on + strand at 1902.870 kb on + strand at 1902.871 kb on - strand at 1902.871 kb on - strand at 1902.871 kb on - strand at 1902.902 kb on - strand at 1903.102 kb on + strand, within Psyr_1695 at 1903.102 kb on + strand, within Psyr_1695 at 1903.139 kb on + strand, within Psyr_1695 at 1903.158 kb on - strand, within Psyr_1695 at 1903.200 kb on + strand, within Psyr_1695 at 1903.200 kb on + strand, within Psyr_1695 at 1903.200 kb on + strand, within Psyr_1695 at 1903.200 kb on + strand, within Psyr_1695 at 1903.201 kb on - strand, within Psyr_1695 at 1903.224 kb on - strand, within Psyr_1695 at 1903.305 kb on - strand, within Psyr_1695 at 1903.407 kb on - strand, within Psyr_1695 at 1903.485 kb on + strand, within Psyr_1695 at 1903.534 kb on - strand at 1903.534 kb on - strand at 1903.534 kb on - strand at 1903.598 kb on + strand at 1903.598 kb on + strand at 1903.598 kb on + strand at 1903.599 kb on - strand at 1903.599 kb on - strand at 1903.599 kb on - strand at 1903.599 kb on - strand at 1903.622 kb on - strand at 1903.622 kb on - strand at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.638 kb on + strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.639 kb on - strand, within Psyr_1696 at 1903.683 kb on + strand, within Psyr_1696 at 1903.683 kb on + strand, within Psyr_1696 at 1903.683 kb on + strand, within Psyr_1696 at 1903.684 kb on - strand, within Psyr_1696 at 1903.684 kb on - strand, within Psyr_1696 at 1903.790 kb on + strand, within Psyr_1696 at 1903.796 kb on + strand, within Psyr_1696 at 1903.797 kb on - strand, within Psyr_1696 at 1903.804 kb on - strand, within Psyr_1696 at 1903.804 kb on - strand, within Psyr_1696 at 1903.941 kb on + strand, within Psyr_1696 at 1903.941 kb on + strand, within Psyr_1696 at 1903.941 kb on + strand, within Psyr_1696 at 1904.042 kb on + strand at 1904.042 kb on + strand at 1904.042 kb on + strand at 1904.042 kb on + strand at 1904.042 kb on + strand at 1904.042 kb on + strand at 1904.042 kb on + strand at 1904.042 kb on + strand at 1904.043 kb on - strand at 1904.043 kb on - strand at 1904.043 kb on - strand at 1904.043 kb on - strand at 1904.043 kb on - strand at 1904.059 kb on + strand at 1904.183 kb on + strand, within Psyr_1697 at 1904.183 kb on + strand, within Psyr_1697 at 1904.183 kb on + strand, within Psyr_1697 at 1904.199 kb on + strand, within Psyr_1697 at 1904.199 kb on + strand, within Psyr_1697 at 1904.199 kb on + strand, within Psyr_1697 at 1904.199 kb on + strand, within Psyr_1697 at 1904.199 kb on + strand, within Psyr_1697 at 1904.199 kb on + strand, within Psyr_1697 at 1904.199 kb on + strand, within Psyr_1697 at 1904.241 kb on + strand, within Psyr_1697 at 1904.241 kb on + strand, within Psyr_1697 at 1904.241 kb on + strand, within Psyr_1697 at 1904.241 kb on + strand, within Psyr_1697 at 1904.241 kb on + strand, within Psyr_1697 at 1904.241 kb on + strand, within Psyr_1697 at 1904.242 kb on - strand, within Psyr_1697 at 1904.242 kb on - strand, within Psyr_1697 at 1904.242 kb on - strand, within Psyr_1697 at 1904.242 kb on - strand, within Psyr_1697 at 1904.283 kb on + strand, within Psyr_1697 at 1904.310 kb on + strand, within Psyr_1697 at 1904.310 kb on + strand, within Psyr_1697 at 1904.310 kb on + strand, within Psyr_1697 at 1904.310 kb on + strand, within Psyr_1697 at 1904.310 kb on + strand, within Psyr_1697 at 1904.310 kb on + strand, within Psyr_1697 at 1904.310 kb on + strand, within Psyr_1697 at 1904.310 kb on + strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.311 kb on - strand, within Psyr_1697 at 1904.318 kb on + strand, within Psyr_1697 at 1904.494 kb on - strand, within Psyr_1697 at 1904.508 kb on + strand, within Psyr_1697 at 1904.535 kb on + strand, within Psyr_1697 at 1904.535 kb on + strand, within Psyr_1697 at 1904.538 kb on + strand, within Psyr_1697 at 1904.539 kb on - strand, within Psyr_1697 at 1904.539 kb on - strand, within Psyr_1697 at 1904.539 kb on - strand, within Psyr_1697 at 1904.539 kb on - strand, within Psyr_1697
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 1,902,189 + +0.1 1,902,189 + +0.1 1,902,190 - +0.2 1,902,190 - -2.7 1,902,575 - Psyr_1694 0.56 -1.6 1,902,575 - Psyr_1694 0.56 +0.3 1,902,617 + Psyr_1694 0.64 -0.5 1,902,617 + Psyr_1694 0.64 -1.0 1,902,745 + Psyr_1694 0.87 -1.2 1,902,745 + Psyr_1694 0.87 -1.9 1,902,746 - Psyr_1694 0.87 -1.2 1,902,866 + -0.5 1,902,866 + -0.3 1,902,866 + +0.7 1,902,866 + +0.1 1,902,866 + +1.6 1,902,867 - -2.4 1,902,867 - -0.8 1,902,867 - -1.0 1,902,867 - +0.5 1,902,868 + -0.2 1,902,868 + -1.0 1,902,868 + -0.2 1,902,868 + -1.3 1,902,868 + +0.9 1,902,868 + +0.1 1,902,868 + +0.3 1,902,868 + -0.5 1,902,868 + +0.3 1,902,868 + -1.7 1,902,868 + -0.2 1,902,868 + +0.8 1,902,868 + -0.3 1,902,868 + +0.0 1,902,868 + +2.1 1,902,868 + +0.1 1,902,868 + +1.1 1,902,868 + +0.5 1,902,868 + -0.6 1,902,868 + +1.1 1,902,868 + -0.8 1,902,868 + +1.4 1,902,869 - +3.1 1,902,869 - -0.4 1,902,869 - -0.8 1,902,869 - -1.9 1,902,869 - -0.4 1,902,869 - +1.1 1,902,869 - +0.4 1,902,869 - -0.1 1,902,869 - -1.9 1,902,869 - -1.4 1,902,869 - -0.2 1,902,869 - +0.0 1,902,870 + -0.1 1,902,870 + +0.3 1,902,870 + -2.0 1,902,870 + +1.4 1,902,871 - +1.1 1,902,871 - -1.9 1,902,871 - -0.9 1,902,902 - -2.0 1,903,102 + Psyr_1695 0.30 +1.4 1,903,102 + Psyr_1695 0.30 -0.9 1,903,139 + Psyr_1695 0.36 -1.0 1,903,158 - Psyr_1695 0.38 -2.8 1,903,200 + Psyr_1695 0.45 -0.6 1,903,200 + Psyr_1695 0.45 -0.0 1,903,200 + Psyr_1695 0.45 +1.3 1,903,200 + Psyr_1695 0.45 -0.3 1,903,201 - Psyr_1695 0.45 -0.3 1,903,224 - Psyr_1695 0.48 -0.9 1,903,305 - Psyr_1695 0.61 +1.4 1,903,407 - Psyr_1695 0.76 -1.1 1,903,485 + Psyr_1695 0.88 +0.6 1,903,534 - -0.9 1,903,534 - -1.6 1,903,534 - -2.9 1,903,598 + +0.9 1,903,598 + +0.8 1,903,598 + -0.0 1,903,599 - +0.3 1,903,599 - -1.3 1,903,599 - +0.7 1,903,599 - -1.3 1,903,622 - +1.9 1,903,622 - -0.4 1,903,638 + Psyr_1696 0.13 +1.0 1,903,638 + Psyr_1696 0.13 +0.1 1,903,638 + Psyr_1696 0.13 +1.4 1,903,638 + Psyr_1696 0.13 -0.5 1,903,638 + Psyr_1696 0.13 -0.2 1,903,638 + Psyr_1696 0.13 -0.5 1,903,638 + Psyr_1696 0.13 +0.1 1,903,638 + Psyr_1696 0.13 +0.4 1,903,638 + Psyr_1696 0.13 +0.1 1,903,638 + Psyr_1696 0.13 +1.1 1,903,638 + Psyr_1696 0.13 -0.5 1,903,638 + Psyr_1696 0.13 -0.2 1,903,638 + Psyr_1696 0.13 +2.7 1,903,639 - Psyr_1696 0.14 +0.4 1,903,639 - Psyr_1696 0.14 +1.9 1,903,639 - Psyr_1696 0.14 -0.5 1,903,639 - Psyr_1696 0.14 +0.8 1,903,639 - Psyr_1696 0.14 -1.1 1,903,639 - Psyr_1696 0.14 +0.5 1,903,639 - Psyr_1696 0.14 +1.5 1,903,639 - Psyr_1696 0.14 -0.1 1,903,639 - Psyr_1696 0.14 -0.1 1,903,639 - Psyr_1696 0.14 +1.8 1,903,639 - Psyr_1696 0.14 -0.1 1,903,639 - Psyr_1696 0.14 +1.4 1,903,639 - Psyr_1696 0.14 +0.6 1,903,639 - Psyr_1696 0.14 +0.2 1,903,639 - Psyr_1696 0.14 -0.1 1,903,639 - Psyr_1696 0.14 +1.6 1,903,683 + Psyr_1696 0.24 +1.7 1,903,683 + Psyr_1696 0.24 +1.1 1,903,683 + Psyr_1696 0.24 -0.2 1,903,684 - Psyr_1696 0.24 -0.1 1,903,684 - Psyr_1696 0.24 +1.9 1,903,790 + Psyr_1696 0.49 +2.7 1,903,796 + Psyr_1696 0.50 +0.6 1,903,797 - Psyr_1696 0.51 -2.0 1,903,804 - Psyr_1696 0.52 +1.5 1,903,804 - Psyr_1696 0.52 -0.8 1,903,941 + Psyr_1696 0.85 -1.7 1,903,941 + Psyr_1696 0.85 -0.5 1,903,941 + Psyr_1696 0.85 +0.5 1,904,042 + -0.9 1,904,042 + +2.1 1,904,042 + -1.0 1,904,042 + -1.6 1,904,042 + +0.5 1,904,042 + -0.6 1,904,042 + -0.9 1,904,042 + +0.1 1,904,043 - -0.6 1,904,043 - +0.9 1,904,043 - -1.4 1,904,043 - -0.7 1,904,043 - -1.1 1,904,059 + -0.1 1,904,183 + Psyr_1697 0.20 -0.7 1,904,183 + Psyr_1697 0.20 -0.4 1,904,183 + Psyr_1697 0.20 -0.9 1,904,199 + Psyr_1697 0.22 +0.0 1,904,199 + Psyr_1697 0.22 +1.3 1,904,199 + Psyr_1697 0.22 +1.4 1,904,199 + Psyr_1697 0.22 -1.3 1,904,199 + Psyr_1697 0.22 +0.5 1,904,199 + Psyr_1697 0.22 -0.1 1,904,199 + Psyr_1697 0.22 -0.2 1,904,241 + Psyr_1697 0.28 -1.2 1,904,241 + Psyr_1697 0.28 +0.4 1,904,241 + Psyr_1697 0.28 -0.1 1,904,241 + Psyr_1697 0.28 +1.6 1,904,241 + Psyr_1697 0.28 +0.7 1,904,241 + Psyr_1697 0.28 +1.5 1,904,242 - Psyr_1697 0.28 -1.8 1,904,242 - Psyr_1697 0.28 -0.3 1,904,242 - Psyr_1697 0.28 -1.2 1,904,242 - Psyr_1697 0.28 -0.9 1,904,283 + Psyr_1697 0.33 -0.2 1,904,310 + Psyr_1697 0.37 -0.1 1,904,310 + Psyr_1697 0.37 -0.6 1,904,310 + Psyr_1697 0.37 +1.9 1,904,310 + Psyr_1697 0.37 -1.0 1,904,310 + Psyr_1697 0.37 +1.1 1,904,310 + Psyr_1697 0.37 +1.2 1,904,310 + Psyr_1697 0.37 -0.4 1,904,310 + Psyr_1697 0.37 -0.3 1,904,311 - Psyr_1697 0.37 -0.6 1,904,311 - Psyr_1697 0.37 +2.2 1,904,311 - Psyr_1697 0.37 +0.1 1,904,311 - Psyr_1697 0.37 +0.2 1,904,311 - Psyr_1697 0.37 +4.6 1,904,311 - Psyr_1697 0.37 -1.1 1,904,311 - Psyr_1697 0.37 -0.7 1,904,311 - Psyr_1697 0.37 -0.9 1,904,311 - Psyr_1697 0.37 +0.2 1,904,318 + Psyr_1697 0.38 +0.7 1,904,494 - Psyr_1697 0.62 +1.5 1,904,508 + Psyr_1697 0.63 +0.3 1,904,535 + Psyr_1697 0.67 -0.5 1,904,535 + Psyr_1697 0.67 -0.1 1,904,538 + Psyr_1697 0.67 +0.7 1,904,539 - Psyr_1697 0.68 -0.6 1,904,539 - Psyr_1697 0.68 +0.9 1,904,539 - Psyr_1697 0.68 -0.7 1,904,539 - Psyr_1697 0.68 -0.3
Or see this region's nucleotide sequence