Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1193

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1191 and Psyr_1192 are separated by 92 nucleotidesPsyr_1192 and Psyr_1193 are separated by 52 nucleotidesPsyr_1193 and Psyr_1194 are separated by 27 nucleotidesPsyr_1194 and Psyr_1195 are separated by 8 nucleotides Psyr_1191: Psyr_1191 - type III transcriptional regulator HrpS, at 1,352,287 to 1,353,195 _1191 Psyr_1192: Psyr_1192 - type III helper protein HrpA2, at 1,353,288 to 1,353,614 _1192 Psyr_1193: Psyr_1193 - type III helper protein HrpZ1, at 1,353,667 to 1,354,698 _1193 Psyr_1194: Psyr_1194 - type III secretion protein HrpB, at 1,354,726 to 1,355,100 _1194 Psyr_1195: Psyr_1195 - type III secretion apparatus lipoprotein, YscJ/HrcJ family, at 1,355,109 to 1,355,915 _1195 Position (kb) 1353 1354 1355Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1352.782 kb on + strand, within Psyr_1191at 1352.783 kb on - strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.909 kb on + strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.910 kb on - strand, within Psyr_1191at 1352.930 kb on + strand, within Psyr_1191at 1352.931 kb on - strand, within Psyr_1191at 1352.931 kb on - strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.993 kb on + strand, within Psyr_1191at 1352.994 kb on - strand, within Psyr_1191at 1352.994 kb on - strand, within Psyr_1191at 1352.994 kb on - strand, within Psyr_1191at 1353.159 kb on + strandat 1353.240 kb on + strandat 1353.240 kb on + strandat 1353.241 kb on - strandat 1353.257 kb on + strandat 1353.257 kb on + strandat 1353.258 kb on - strandat 1353.265 kb on + strandat 1353.266 kb on - strandat 1353.279 kb on + strandat 1353.288 kb on - strandat 1353.294 kb on - strandat 1353.294 kb on - strandat 1353.389 kb on + strand, within Psyr_1192at 1353.390 kb on - strand, within Psyr_1192at 1353.649 kb on + strandat 1353.650 kb on - strandat 1353.685 kb on - strandat 1354.398 kb on + strand, within Psyr_1193at 1354.659 kb on + strandat 1354.747 kb on - strandat 1354.752 kb on + strandat 1354.753 kb on - strandat 1355.089 kb on - strandat 1355.149 kb on + strandat 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.430 kb on + strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.431 kb on - strand, within Psyr_1195at 1355.503 kb on + strand, within Psyr_1195at 1355.503 kb on + strand, within Psyr_1195at 1355.503 kb on + strand, within Psyr_1195at 1355.504 kb on - strand, within Psyr_1195at 1355.504 kb on - strand, within Psyr_1195at 1355.504 kb on - strand, within Psyr_1195at 1355.631 kb on - strand, within Psyr_1195

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,352,782 + Psyr_1191 0.54 +1.8
1,352,783 - Psyr_1191 0.55 +0.6
1,352,909 + Psyr_1191 0.68 -1.8
1,352,909 + Psyr_1191 0.68 +2.2
1,352,909 + Psyr_1191 0.68 -2.3
1,352,909 + Psyr_1191 0.68 +1.1
1,352,909 + Psyr_1191 0.68 +0.6
1,352,909 + Psyr_1191 0.68 -0.7
1,352,909 + Psyr_1191 0.68 -0.3
1,352,909 + Psyr_1191 0.68 -0.8
1,352,909 + Psyr_1191 0.68 +0.7
1,352,909 + Psyr_1191 0.68 +0.6
1,352,910 - Psyr_1191 0.69 -0.4
1,352,910 - Psyr_1191 0.69 +0.2
1,352,910 - Psyr_1191 0.69 -0.7
1,352,910 - Psyr_1191 0.69 -0.9
1,352,910 - Psyr_1191 0.69 +0.3
1,352,910 - Psyr_1191 0.69 +0.4
1,352,910 - Psyr_1191 0.69 -0.9
1,352,910 - Psyr_1191 0.69 +1.0
1,352,910 - Psyr_1191 0.69 -0.8
1,352,910 - Psyr_1191 0.69 +0.9
1,352,930 + Psyr_1191 0.71 -0.7
1,352,931 - Psyr_1191 0.71 +0.2
1,352,931 - Psyr_1191 0.71 +0.5
1,352,993 + Psyr_1191 0.78 +1.2
1,352,993 + Psyr_1191 0.78 -0.9
1,352,993 + Psyr_1191 0.78 -0.0
1,352,993 + Psyr_1191 0.78 +0.1
1,352,993 + Psyr_1191 0.78 -0.4
1,352,993 + Psyr_1191 0.78 -0.7
1,352,994 - Psyr_1191 0.78 -0.6
1,352,994 - Psyr_1191 0.78 -0.0
1,352,994 - Psyr_1191 0.78 -1.0
1,353,159 + -0.6
1,353,240 + -0.5
1,353,240 + -0.8
1,353,241 - -0.3
1,353,257 + +1.6
1,353,257 + -0.1
1,353,258 - +3.0
1,353,265 + -0.5
1,353,266 - +0.2
1,353,279 + -0.6
1,353,288 - +0.3
1,353,294 - -1.1
1,353,294 - -0.9
1,353,389 + Psyr_1192 0.31 +1.8
1,353,390 - Psyr_1192 0.31 +0.5
1,353,649 + -0.2
1,353,650 - -0.0
1,353,685 - +0.2
1,354,398 + Psyr_1193 0.71 -0.3
1,354,659 + +0.3
1,354,747 - -2.1
1,354,752 + +0.4
1,354,753 - +0.1
1,355,089 - -0.1
1,355,149 + +1.3
1,355,430 + Psyr_1195 0.40 +1.7
1,355,430 + Psyr_1195 0.40 +0.2
1,355,430 + Psyr_1195 0.40 -0.2
1,355,430 + Psyr_1195 0.40 -0.6
1,355,430 + Psyr_1195 0.40 -0.2
1,355,430 + Psyr_1195 0.40 -1.1
1,355,430 + Psyr_1195 0.40 +0.4
1,355,430 + Psyr_1195 0.40 +3.2
1,355,430 + Psyr_1195 0.40 -0.3
1,355,430 + Psyr_1195 0.40 +0.2
1,355,430 + Psyr_1195 0.40 +0.4
1,355,430 + Psyr_1195 0.40 -0.3
1,355,430 + Psyr_1195 0.40 -1.4
1,355,431 - Psyr_1195 0.40 -0.6
1,355,431 - Psyr_1195 0.40 +0.2
1,355,431 - Psyr_1195 0.40 -0.3
1,355,431 - Psyr_1195 0.40 +0.2
1,355,431 - Psyr_1195 0.40 +2.2
1,355,431 - Psyr_1195 0.40 +0.7
1,355,431 - Psyr_1195 0.40 -0.6
1,355,431 - Psyr_1195 0.40 -0.6
1,355,431 - Psyr_1195 0.40 +0.1
1,355,431 - Psyr_1195 0.40 +0.6
1,355,503 + Psyr_1195 0.49 -0.6
1,355,503 + Psyr_1195 0.49 +0.2
1,355,503 + Psyr_1195 0.49 -0.9
1,355,504 - Psyr_1195 0.49 +1.3
1,355,504 - Psyr_1195 0.49 -0.5
1,355,504 - Psyr_1195 0.49 -2.8
1,355,631 - Psyr_1195 0.65 +0.0

Or see this region's nucleotide sequence