Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_1098

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1096 and Psyr_1097 are separated by 10 nucleotidesPsyr_1097 and Psyr_1098 are separated by 325 nucleotidesPsyr_1098 and Psyr_1099 are separated by 9 nucleotidesPsyr_1099 and Psyr_1100 overlap by 16 nucleotides Psyr_1096: Psyr_1096 - glycine dehydrogenase (decarboxylating) alpha subunit / glycine dehydrogenase (decarboxylating) beta subunit, at 1,238,600 to 1,241,464 _1096 Psyr_1097: Psyr_1097 - glycine cleavage system H protein, at 1,241,475 to 1,241,858 _1097 Psyr_1098: Psyr_1098 - response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s), at 1,242,184 to 1,244,301 _1098 Psyr_1099: Psyr_1099 - Response regulator receiver, at 1,244,311 to 1,244,700 _1099 Psyr_1100: Psyr_1100 - PAS/PAC sensor signal transduction histidine kinase, at 1,244,685 to 1,246,415 _1100 Position (kb) 1242 1243 1244 1245Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.199 kb on + strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.200 kb on - strandat 1241.202 kb on + strandat 1241.202 kb on + strandat 1241.203 kb on - strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.217 kb on + strandat 1241.218 kb on - strandat 1241.218 kb on - strandat 1241.719 kb on + strand, within Psyr_1097at 1241.728 kb on - strand, within Psyr_1097at 1241.783 kb on + strand, within Psyr_1097at 1241.783 kb on + strand, within Psyr_1097at 1241.901 kb on + strandat 1241.999 kb on - strandat 1242.023 kb on + strandat 1242.024 kb on - strandat 1242.024 kb on - strandat 1242.033 kb on + strandat 1242.034 kb on - strandat 1242.034 kb on - strandat 1242.150 kb on + strandat 1242.150 kb on + strandat 1242.150 kb on + strandat 1242.150 kb on + strandat 1242.477 kb on - strand, within Psyr_1098at 1242.504 kb on + strand, within Psyr_1098at 1242.504 kb on + strand, within Psyr_1098at 1242.505 kb on - strand, within Psyr_1098at 1242.505 kb on - strand, within Psyr_1098at 1242.805 kb on + strand, within Psyr_1098at 1242.805 kb on + strand, within Psyr_1098at 1242.805 kb on + strand, within Psyr_1098at 1242.806 kb on - strand, within Psyr_1098at 1242.993 kb on + strand, within Psyr_1098at 1242.993 kb on + strand, within Psyr_1098at 1242.993 kb on + strand, within Psyr_1098at 1242.994 kb on - strand, within Psyr_1098at 1242.995 kb on + strand, within Psyr_1098at 1242.995 kb on + strand, within Psyr_1098at 1242.995 kb on + strand, within Psyr_1098at 1242.996 kb on - strand, within Psyr_1098at 1243.004 kb on + strand, within Psyr_1098at 1243.046 kb on + strand, within Psyr_1098at 1243.047 kb on - strand, within Psyr_1098at 1243.047 kb on - strand, within Psyr_1098at 1243.047 kb on - strand, within Psyr_1098at 1243.138 kb on + strand, within Psyr_1098at 1243.667 kb on + strand, within Psyr_1098at 1243.667 kb on + strand, within Psyr_1098at 1243.667 kb on + strand, within Psyr_1098at 1243.668 kb on - strand, within Psyr_1098at 1243.668 kb on - strand, within Psyr_1098at 1243.942 kb on - strand, within Psyr_1098at 1243.989 kb on - strand, within Psyr_1098at 1243.989 kb on - strand, within Psyr_1098at 1243.989 kb on - strand, within Psyr_1098at 1244.062 kb on + strand, within Psyr_1098at 1244.062 kb on + strand, within Psyr_1098at 1244.062 kb on + strand, within Psyr_1098at 1244.063 kb on - strand, within Psyr_1098at 1244.063 kb on - strand, within Psyr_1098at 1244.063 kb on - strand, within Psyr_1098at 1244.108 kb on + strandat 1244.109 kb on - strandat 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.399 kb on + strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.400 kb on - strand, within Psyr_1099at 1244.644 kb on + strand, within Psyr_1099at 1244.644 kb on + strand, within Psyr_1099at 1244.645 kb on - strand, within Psyr_1099at 1244.645 kb on - strand, within Psyr_1099at 1244.645 kb on - strand, within Psyr_1099at 1244.645 kb on - strand, within Psyr_1099at 1245.008 kb on + strand, within Psyr_1100at 1245.101 kb on - strand, within Psyr_1100

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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1,241,199 + -0.2
1,241,199 + -0.6
1,241,199 + -0.6
1,241,199 + -1.4
1,241,199 + +2.8
1,241,199 + +1.2
1,241,199 + -0.1
1,241,199 + +0.0
1,241,200 - +0.4
1,241,200 - -1.1
1,241,200 - +1.1
1,241,200 - +0.4
1,241,200 - +1.1
1,241,200 - +0.4
1,241,200 - +1.9
1,241,200 - -0.1
1,241,200 - +0.5
1,241,202 + +0.2
1,241,202 + +0.2
1,241,203 - -0.8
1,241,217 + -1.5
1,241,217 + -1.0
1,241,217 + +1.0
1,241,217 + -1.1
1,241,218 - -1.1
1,241,218 - +0.3
1,241,719 + Psyr_1097 0.64 +1.8
1,241,728 - Psyr_1097 0.66 +0.6
1,241,783 + Psyr_1097 0.80 +0.0
1,241,783 + Psyr_1097 0.80 +3.0
1,241,901 + -0.2
1,241,999 - +0.1
1,242,023 + +0.3
1,242,024 - -3.0
1,242,024 - -0.1
1,242,033 + -0.1
1,242,034 - -0.8
1,242,034 - +1.8
1,242,150 + +0.8
1,242,150 + +0.3
1,242,150 + -1.8
1,242,150 + +1.8
1,242,477 - Psyr_1098 0.14 -0.1
1,242,504 + Psyr_1098 0.15 -1.1
1,242,504 + Psyr_1098 0.15 -0.6
1,242,505 - Psyr_1098 0.15 -2.0
1,242,505 - Psyr_1098 0.15 +0.6
1,242,805 + Psyr_1098 0.29 +1.8
1,242,805 + Psyr_1098 0.29 -0.1
1,242,805 + Psyr_1098 0.29 -0.6
1,242,806 - Psyr_1098 0.29 +0.1
1,242,993 + Psyr_1098 0.38 -0.5
1,242,993 + Psyr_1098 0.38 -1.0
1,242,993 + Psyr_1098 0.38 -1.7
1,242,994 - Psyr_1098 0.38 +0.0
1,242,995 + Psyr_1098 0.38 +0.2
1,242,995 + Psyr_1098 0.38 -0.0
1,242,995 + Psyr_1098 0.38 +0.4
1,242,996 - Psyr_1098 0.38 -0.5
1,243,004 + Psyr_1098 0.39 +0.6
1,243,046 + Psyr_1098 0.41 +0.3
1,243,047 - Psyr_1098 0.41 -1.5
1,243,047 - Psyr_1098 0.41 +0.9
1,243,047 - Psyr_1098 0.41 -0.8
1,243,138 + Psyr_1098 0.45 -0.9
1,243,667 + Psyr_1098 0.70 +1.2
1,243,667 + Psyr_1098 0.70 -0.2
1,243,667 + Psyr_1098 0.70 +0.8
1,243,668 - Psyr_1098 0.70 +2.5
1,243,668 - Psyr_1098 0.70 +0.0
1,243,942 - Psyr_1098 0.83 -0.8
1,243,989 - Psyr_1098 0.85 +0.6
1,243,989 - Psyr_1098 0.85 +0.7
1,243,989 - Psyr_1098 0.85 +0.1
1,244,062 + Psyr_1098 0.89 +0.1
1,244,062 + Psyr_1098 0.89 -2.3
1,244,062 + Psyr_1098 0.89 -0.3
1,244,063 - Psyr_1098 0.89 +3.5
1,244,063 - Psyr_1098 0.89 -0.4
1,244,063 - Psyr_1098 0.89 -0.5
1,244,108 + +1.8
1,244,109 - -0.8
1,244,399 + Psyr_1099 0.23 +0.8
1,244,399 + Psyr_1099 0.23 -0.0
1,244,399 + Psyr_1099 0.23 +1.2
1,244,399 + Psyr_1099 0.23 +1.1
1,244,399 + Psyr_1099 0.23 -2.3
1,244,399 + Psyr_1099 0.23 +0.5
1,244,399 + Psyr_1099 0.23 -0.9
1,244,400 - Psyr_1099 0.23 -0.3
1,244,400 - Psyr_1099 0.23 +1.3
1,244,400 - Psyr_1099 0.23 +0.5
1,244,400 - Psyr_1099 0.23 -2.1
1,244,400 - Psyr_1099 0.23 -0.6
1,244,400 - Psyr_1099 0.23 +0.4
1,244,644 + Psyr_1099 0.85 -1.2
1,244,644 + Psyr_1099 0.85 -0.1
1,244,645 - Psyr_1099 0.86 +0.6
1,244,645 - Psyr_1099 0.86 -1.0
1,244,645 - Psyr_1099 0.86 +0.9
1,244,645 - Psyr_1099 0.86 +0.8
1,245,008 + Psyr_1100 0.19 -0.2
1,245,101 - Psyr_1100 0.24 -1.4

Or see this region's nucleotide sequence