Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0235 and Psyr_0236 overlap by 29 nucleotides Psyr_0236 and Psyr_0237 are separated by 74 nucleotides
Psyr_0235: Psyr_0235 - D-amino acid dehydrogenase small subunit, at 249,112 to 250,413
_0235
Psyr_0236: Psyr_0236 - Endoribonuclease L-PSP, at 250,385 to 250,738
_0236
Psyr_0237: Psyr_0237 - alanine racemase, at 250,813 to 251,886
_0237
Position (kb) 250
251 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 249.412 kb on + strand, within Psyr_0235 at 249.413 kb on - strand, within Psyr_0235 at 249.423 kb on + strand, within Psyr_0235 at 249.423 kb on + strand, within Psyr_0235 at 249.424 kb on - strand, within Psyr_0235 at 249.424 kb on - strand, within Psyr_0235 at 249.437 kb on + strand, within Psyr_0235 at 249.438 kb on - strand, within Psyr_0235 at 249.451 kb on + strand, within Psyr_0235 at 249.451 kb on + strand, within Psyr_0235 at 249.452 kb on - strand, within Psyr_0235 at 249.601 kb on + strand, within Psyr_0235 at 249.814 kb on - strand, within Psyr_0235 at 249.856 kb on + strand, within Psyr_0235 at 249.856 kb on + strand, within Psyr_0235 at 249.861 kb on - strand, within Psyr_0235 at 249.861 kb on - strand, within Psyr_0235 at 249.861 kb on - strand, within Psyr_0235 at 249.878 kb on - strand, within Psyr_0235 at 249.878 kb on - strand, within Psyr_0235 at 249.878 kb on - strand, within Psyr_0235 at 250.003 kb on + strand, within Psyr_0235 at 250.003 kb on + strand, within Psyr_0235 at 250.003 kb on + strand, within Psyr_0235 at 250.004 kb on - strand, within Psyr_0235 at 250.004 kb on - strand, within Psyr_0235 at 250.004 kb on - strand, within Psyr_0235 at 250.004 kb on - strand, within Psyr_0235 at 250.006 kb on - strand, within Psyr_0235 at 250.129 kb on + strand, within Psyr_0235 at 250.129 kb on + strand, within Psyr_0235 at 250.130 kb on - strand, within Psyr_0235 at 250.197 kb on + strand, within Psyr_0235 at 250.326 kb on + strand at 250.327 kb on - strand at 250.327 kb on - strand at 250.347 kb on + strand at 250.347 kb on + strand at 250.348 kb on - strand at 250.451 kb on + strand, within Psyr_0236 at 250.451 kb on + strand, within Psyr_0236 at 250.452 kb on - strand, within Psyr_0236 at 250.584 kb on - strand, within Psyr_0236 at 250.802 kb on + strand at 250.802 kb on + strand at 250.802 kb on + strand at 250.802 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 249,412 + Psyr_0235 0.23 -0.1 249,413 - Psyr_0235 0.23 +0.6 249,423 + Psyr_0235 0.24 +0.2 249,423 + Psyr_0235 0.24 +0.8 249,424 - Psyr_0235 0.24 +0.3 249,424 - Psyr_0235 0.24 -1.6 249,437 + Psyr_0235 0.25 +1.1 249,438 - Psyr_0235 0.25 -2.7 249,451 + Psyr_0235 0.26 +0.3 249,451 + Psyr_0235 0.26 -0.5 249,452 - Psyr_0235 0.26 -0.4 249,601 + Psyr_0235 0.38 +0.4 249,814 - Psyr_0235 0.54 -0.5 249,856 + Psyr_0235 0.57 -0.4 249,856 + Psyr_0235 0.57 -1.7 249,861 - Psyr_0235 0.58 -3.3 249,861 - Psyr_0235 0.58 -1.9 249,861 - Psyr_0235 0.58 -1.9 249,878 - Psyr_0235 0.59 -0.8 249,878 - Psyr_0235 0.59 +0.6 249,878 - Psyr_0235 0.59 +0.4 250,003 + Psyr_0235 0.68 +0.8 250,003 + Psyr_0235 0.68 +1.8 250,003 + Psyr_0235 0.68 +0.4 250,004 - Psyr_0235 0.69 +1.4 250,004 - Psyr_0235 0.69 +0.7 250,004 - Psyr_0235 0.69 -0.3 250,004 - Psyr_0235 0.69 +0.6 250,006 - Psyr_0235 0.69 +0.1 250,129 + Psyr_0235 0.78 -0.6 250,129 + Psyr_0235 0.78 -0.4 250,130 - Psyr_0235 0.78 -1.4 250,197 + Psyr_0235 0.83 +2.1 250,326 + +0.4 250,327 - -0.5 250,327 - -0.5 250,347 + +1.4 250,347 + -0.5 250,348 - -0.9 250,451 + Psyr_0236 0.19 -0.8 250,451 + Psyr_0236 0.19 -0.0 250,452 - Psyr_0236 0.19 -2.6 250,584 - Psyr_0236 0.56 -3.0 250,802 + +1.0 250,802 + -0.0 250,802 + +0.4 250,802 + -0.2
Or see this region's nucleotide sequence