Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0144 and Psyr_0145 are separated by 47 nucleotides Psyr_0145 and Psyr_0146 are separated by 63 nucleotides
Psyr_0144: Psyr_0144 - transcriptional regulator, AsnC family, at 157,030 to 157,518
_0144
Psyr_0145: Psyr_0145 - conserved hypothetical protein, at 157,566 to 158,240
_0145
Psyr_0146: Psyr_0146 - 4-aminobutyrate aminotransferase apoenzyme, at 158,304 to 159,608
_0146
Position (kb) 157
158
159 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 156.617 kb on + strand at 156.618 kb on - strand at 156.624 kb on - strand at 156.624 kb on - strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.642 kb on + strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.643 kb on - strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.646 kb on + strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.647 kb on - strand at 156.669 kb on + strand at 156.780 kb on - strand at 156.780 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.922 kb on - strand at 156.988 kb on + strand at 156.989 kb on - strand at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.094 kb on + strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.095 kb on - strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.103 kb on + strand, within Psyr_0144 at 157.104 kb on - strand, within Psyr_0144 at 157.104 kb on - strand, within Psyr_0144 at 157.104 kb on - strand, within Psyr_0144 at 157.190 kb on + strand, within Psyr_0144 at 157.190 kb on + strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.339 kb on - strand, within Psyr_0144 at 157.352 kb on + strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.353 kb on - strand, within Psyr_0144 at 157.365 kb on - strand, within Psyr_0144 at 157.365 kb on - strand, within Psyr_0144 at 157.365 kb on - strand, within Psyr_0144 at 157.472 kb on - strand at 157.479 kb on + strand at 157.479 kb on + strand at 157.480 kb on - strand at 157.480 kb on - strand at 157.480 kb on - strand at 157.485 kb on + strand at 157.519 kb on + strand at 157.519 kb on + strand at 157.519 kb on + strand at 157.520 kb on - strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.523 kb on + strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.524 kb on - strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.532 kb on + strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.533 kb on - strand at 157.552 kb on - strand at 157.559 kb on - strand at 157.619 kb on + strand at 157.625 kb on + strand at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.864 kb on + strand, within Psyr_0145 at 157.865 kb on - strand, within Psyr_0145 at 157.865 kb on - strand, within Psyr_0145 at 157.865 kb on - strand, within Psyr_0145 at 157.894 kb on + strand, within Psyr_0145 at 157.895 kb on - strand, within Psyr_0145 at 158.056 kb on + strand, within Psyr_0145 at 158.213 kb on + strand at 158.213 kb on + strand at 158.213 kb on + strand at 158.566 kb on + strand, within Psyr_0146 at 158.566 kb on + strand, within Psyr_0146 at 158.567 kb on - strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.647 kb on + strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.648 kb on - strand, within Psyr_0146 at 158.843 kb on + strand, within Psyr_0146 at 158.843 kb on + strand, within Psyr_0146 at 158.844 kb on - strand, within Psyr_0146 at 158.850 kb on - strand, within Psyr_0146 at 159.068 kb on - strand, within Psyr_0146 at 159.128 kb on - strand, within Psyr_0146 at 159.128 kb on - strand, within Psyr_0146 at 159.167 kb on + strand, within Psyr_0146
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 156,617 + +1.7 156,618 - +0.2 156,624 - -0.5 156,624 - -0.6 156,642 + -0.1 156,642 + -0.7 156,642 + -0.0 156,642 + -0.5 156,642 + +0.4 156,642 + -1.1 156,642 + -0.5 156,642 + -0.7 156,642 + -0.6 156,642 + +1.3 156,642 + +1.0 156,642 + -0.3 156,642 + -1.7 156,642 + -0.5 156,642 + +0.4 156,642 + +2.4 156,642 + +0.5 156,642 + +1.2 156,642 + -0.0 156,642 + -0.2 156,642 + +0.2 156,642 + -0.9 156,642 + -0.6 156,642 + -0.7 156,643 - -3.0 156,643 - -1.8 156,643 - +0.3 156,643 - +0.4 156,643 - -0.3 156,643 - +0.0 156,643 - -0.1 156,643 - +1.4 156,643 - -0.3 156,643 - +0.7 156,643 - +0.1 156,643 - +0.5 156,643 - +0.2 156,643 - +1.4 156,643 - +0.7 156,643 - +1.7 156,643 - -0.4 156,643 - +0.7 156,643 - -0.2 156,646 + -2.2 156,646 + +0.8 156,646 + -0.5 156,646 + -1.9 156,646 + -0.6 156,646 + -0.3 156,647 - -1.3 156,647 - -1.3 156,647 - +2.7 156,647 - +1.4 156,647 - -0.6 156,647 - -0.8 156,647 - -1.1 156,647 - +4.2 156,647 - -0.6 156,669 + -1.0 156,780 - -0.9 156,780 - -1.0 156,922 - -0.1 156,922 - +0.0 156,922 - +0.8 156,922 - -0.7 156,922 - -1.0 156,922 - +0.6 156,922 - +4.2 156,922 - -2.1 156,988 + +0.3 156,989 - -0.9 157,094 + Psyr_0144 0.13 -0.2 157,094 + Psyr_0144 0.13 -0.4 157,094 + Psyr_0144 0.13 +0.7 157,094 + Psyr_0144 0.13 -0.3 157,095 - Psyr_0144 0.13 +2.0 157,095 - Psyr_0144 0.13 -0.6 157,095 - Psyr_0144 0.13 -0.1 157,095 - Psyr_0144 0.13 +0.8 157,095 - Psyr_0144 0.13 +1.3 157,095 - Psyr_0144 0.13 -0.8 157,095 - Psyr_0144 0.13 -0.6 157,095 - Psyr_0144 0.13 +0.8 157,103 + Psyr_0144 0.15 -0.0 157,103 + Psyr_0144 0.15 +0.1 157,103 + Psyr_0144 0.15 +0.6 157,104 - Psyr_0144 0.15 +0.3 157,104 - Psyr_0144 0.15 +0.3 157,104 - Psyr_0144 0.15 -1.4 157,190 + Psyr_0144 0.33 -0.5 157,190 + Psyr_0144 0.33 -1.5 157,339 - Psyr_0144 0.63 +1.1 157,339 - Psyr_0144 0.63 -0.5 157,352 + Psyr_0144 0.66 +0.4 157,353 - Psyr_0144 0.66 +0.3 157,353 - Psyr_0144 0.66 +0.9 157,365 - Psyr_0144 0.69 +0.1 157,365 - Psyr_0144 0.69 +1.2 157,365 - Psyr_0144 0.69 -0.2 157,472 - -0.1 157,479 + -0.9 157,479 + -0.4 157,480 - -0.8 157,480 - -1.9 157,480 - -1.2 157,485 + +0.4 157,519 + +0.4 157,519 + -2.1 157,519 + -2.1 157,520 - -1.5 157,523 + -2.0 157,523 + +0.6 157,523 + -2.4 157,523 + -1.6 157,524 - -2.3 157,524 - +1.2 157,524 - +0.1 157,524 - -0.6 157,524 - -1.9 157,524 - -1.0 157,524 - +0.0 157,524 - -0.9 157,532 + +0.3 157,532 + +0.7 157,532 + +1.1 157,532 + -0.9 157,532 + -0.8 157,532 + -0.2 157,532 + -0.3 157,532 + -0.8 157,532 + +3.0 157,533 - -0.0 157,533 - +0.1 157,533 - -0.1 157,533 - +0.7 157,533 - +0.4 157,533 - +0.1 157,533 - +1.6 157,533 - -0.1 157,552 - -1.3 157,559 - -0.5 157,619 + +0.4 157,625 + -0.3 157,864 + Psyr_0145 0.44 +0.8 157,864 + Psyr_0145 0.44 +1.5 157,864 + Psyr_0145 0.44 +1.0 157,864 + Psyr_0145 0.44 +1.2 157,864 + Psyr_0145 0.44 -0.1 157,864 + Psyr_0145 0.44 +1.1 157,865 - Psyr_0145 0.44 -0.0 157,865 - Psyr_0145 0.44 +0.7 157,865 - Psyr_0145 0.44 +0.8 157,894 + Psyr_0145 0.49 +0.6 157,895 - Psyr_0145 0.49 -0.8 158,056 + Psyr_0145 0.73 -0.5 158,213 + -0.7 158,213 + +0.5 158,213 + +0.1 158,566 + Psyr_0146 0.20 -2.6 158,566 + Psyr_0146 0.20 -0.4 158,567 - Psyr_0146 0.20 +0.4 158,647 + Psyr_0146 0.26 +3.1 158,647 + Psyr_0146 0.26 +0.6 158,647 + Psyr_0146 0.26 -1.2 158,647 + Psyr_0146 0.26 +0.2 158,647 + Psyr_0146 0.26 -0.7 158,647 + Psyr_0146 0.26 -0.1 158,647 + Psyr_0146 0.26 -0.3 158,648 - Psyr_0146 0.26 +0.1 158,648 - Psyr_0146 0.26 -0.3 158,648 - Psyr_0146 0.26 +0.4 158,648 - Psyr_0146 0.26 +0.0 158,648 - Psyr_0146 0.26 -0.3 158,648 - Psyr_0146 0.26 -0.8 158,648 - Psyr_0146 0.26 +1.4 158,648 - Psyr_0146 0.26 -1.2 158,648 - Psyr_0146 0.26 +0.7 158,648 - Psyr_0146 0.26 -0.9 158,843 + Psyr_0146 0.41 +1.0 158,843 + Psyr_0146 0.41 +0.2 158,844 - Psyr_0146 0.41 +0.5 158,850 - Psyr_0146 0.42 -0.2 159,068 - Psyr_0146 0.59 -1.7 159,128 - Psyr_0146 0.63 +1.9 159,128 - Psyr_0146 0.63 -1.7 159,167 + Psyr_0146 0.66 -0.3
Or see this region's nucleotide sequence