Strain Fitness in Agrobacterium fabrum C58 around Atu3782

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3780 and Atu3781 are separated by 251 nucleotidesAtu3781 and Atu3782 overlap by 4 nucleotidesAtu3782 and Atu3783 are separated by 74 nucleotides Atu3780: Atu3780 - hypothetical protein, at 863,192 to 864,427 Atu3780 Atu3781: Atu3781 - two component response regulator, at 864,679 to 865,353 Atu3781 Atu3782: Atu3782 - two component sensor kinase, at 865,350 to 866,705 Atu3782 Atu3783: Atu3783 - glutamate synthase subunit beta, at 866,780 to 868,234 Atu3783 Position (kb) 865 866 867Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 864.532 kb on + strandat 864.545 kb on - strandat 864.599 kb on - strandat 864.724 kb on - strandat 864.724 kb on - strandat 864.741 kb on - strandat 864.762 kb on - strand, within Atu3781at 864.796 kb on + strand, within Atu3781at 864.796 kb on + strand, within Atu3781at 864.804 kb on - strand, within Atu3781at 864.804 kb on - strand, within Atu3781at 864.815 kb on + strand, within Atu3781at 864.934 kb on + strand, within Atu3781at 864.982 kb on + strand, within Atu3781at 865.055 kb on + strand, within Atu3781at 865.091 kb on + strand, within Atu3781at 865.173 kb on + strand, within Atu3781at 865.175 kb on + strand, within Atu3781at 865.181 kb on - strand, within Atu3781at 865.181 kb on - strand, within Atu3781at 865.186 kb on - strand, within Atu3781at 865.231 kb on + strand, within Atu3781at 865.508 kb on - strand, within Atu3782at 865.525 kb on + strand, within Atu3782at 865.606 kb on + strand, within Atu3782at 865.606 kb on + strand, within Atu3782at 865.624 kb on - strand, within Atu3782at 865.624 kb on - strand, within Atu3782at 865.667 kb on - strand, within Atu3782at 865.743 kb on + strand, within Atu3782at 865.829 kb on - strand, within Atu3782at 865.863 kb on - strand, within Atu3782at 865.940 kb on + strand, within Atu3782at 865.948 kb on - strand, within Atu3782at 865.962 kb on - strand, within Atu3782at 865.967 kb on - strand, within Atu3782at 865.967 kb on - strand, within Atu3782at 865.967 kb on - strand, within Atu3782at 866.139 kb on + strand, within Atu3782at 866.209 kb on + strand, within Atu3782at 866.222 kb on - strand, within Atu3782at 866.265 kb on + strand, within Atu3782at 866.274 kb on - strand, within Atu3782at 866.294 kb on + strand, within Atu3782at 866.294 kb on + strand, within Atu3782at 866.302 kb on - strand, within Atu3782at 866.341 kb on + strand, within Atu3782at 866.341 kb on + strand, within Atu3782at 866.341 kb on + strand, within Atu3782at 866.349 kb on - strand, within Atu3782at 866.349 kb on - strand, within Atu3782at 866.349 kb on - strand, within Atu3782at 866.349 kb on - strand, within Atu3782at 866.437 kb on + strand, within Atu3782at 866.470 kb on + strand, within Atu3782at 866.470 kb on + strand, within Atu3782at 866.476 kb on + strand, within Atu3782at 866.481 kb on + strand, within Atu3782at 866.489 kb on - strand, within Atu3782at 866.600 kb on + strandat 866.608 kb on - strandat 866.637 kb on + strandat 866.861 kb on - strandat 866.895 kb on + strandat 866.903 kb on - strandat 866.926 kb on - strand, within Atu3783at 867.120 kb on - strand, within Atu3783at 867.122 kb on + strand, within Atu3783at 867.217 kb on - strand, within Atu3783at 867.227 kb on - strand, within Atu3783at 867.227 kb on - strand, within Atu3783at 867.236 kb on - strand, within Atu3783at 867.308 kb on - strand, within Atu3783at 867.442 kb on - strand, within Atu3783at 867.447 kb on + strand, within Atu3783at 867.447 kb on + strand, within Atu3783at 867.455 kb on - strand, within Atu3783at 867.455 kb on - strand, within Atu3783at 867.591 kb on - strand, within Atu3783at 867.595 kb on + strand, within Atu3783at 867.615 kb on + strand, within Atu3783at 867.615 kb on + strand, within Atu3783at 867.623 kb on - strand, within Atu3783at 867.623 kb on - strand, within Atu3783at 867.623 kb on - strand, within Atu3783at 867.655 kb on - strand, within Atu3783at 867.667 kb on + strand, within Atu3783at 867.675 kb on + strand, within Atu3783at 867.689 kb on + strand, within Atu3783

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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864,532 + -0.3
864,545 - +0.8
864,599 - +0.4
864,724 - -0.1
864,724 - -0.0
864,741 - -0.0
864,762 - Atu3781 0.12 -2.0
864,796 + Atu3781 0.17 -0.3
864,796 + Atu3781 0.17 -0.0
864,804 - Atu3781 0.19 +0.2
864,804 - Atu3781 0.19 -0.3
864,815 + Atu3781 0.20 +0.3
864,934 + Atu3781 0.38 -0.6
864,982 + Atu3781 0.45 +0.4
865,055 + Atu3781 0.56 -1.0
865,091 + Atu3781 0.61 -0.8
865,173 + Atu3781 0.73 +0.1
865,175 + Atu3781 0.73 -0.1
865,181 - Atu3781 0.74 -0.0
865,181 - Atu3781 0.74 +0.8
865,186 - Atu3781 0.75 -0.6
865,231 + Atu3781 0.82 +0.1
865,508 - Atu3782 0.12 +0.3
865,525 + Atu3782 0.13 +0.8
865,606 + Atu3782 0.19 +0.4
865,606 + Atu3782 0.19 -0.2
865,624 - Atu3782 0.20 -0.2
865,624 - Atu3782 0.20 -0.0
865,667 - Atu3782 0.23 -0.3
865,743 + Atu3782 0.29 +0.9
865,829 - Atu3782 0.35 +0.3
865,863 - Atu3782 0.38 +0.8
865,940 + Atu3782 0.44 +0.0
865,948 - Atu3782 0.44 +0.2
865,962 - Atu3782 0.45 -0.2
865,967 - Atu3782 0.46 -0.3
865,967 - Atu3782 0.46 -0.6
865,967 - Atu3782 0.46 +0.4
866,139 + Atu3782 0.58 -0.3
866,209 + Atu3782 0.63 +1.2
866,222 - Atu3782 0.64 +0.1
866,265 + Atu3782 0.67 +0.4
866,274 - Atu3782 0.68 -0.4
866,294 + Atu3782 0.70 -0.4
866,294 + Atu3782 0.70 -0.2
866,302 - Atu3782 0.70 -0.1
866,341 + Atu3782 0.73 -0.1
866,341 + Atu3782 0.73 +0.0
866,341 + Atu3782 0.73 +0.2
866,349 - Atu3782 0.74 -0.0
866,349 - Atu3782 0.74 +0.2
866,349 - Atu3782 0.74 +0.0
866,349 - Atu3782 0.74 +0.1
866,437 + Atu3782 0.80 -0.6
866,470 + Atu3782 0.83 -0.6
866,470 + Atu3782 0.83 -0.1
866,476 + Atu3782 0.83 +0.3
866,481 + Atu3782 0.83 -0.8
866,489 - Atu3782 0.84 -0.1
866,600 + -0.2
866,608 - +1.0
866,637 + +0.6
866,861 - -5.5
866,895 + -1.6
866,903 - -3.6
866,926 - Atu3783 0.10 -5.5
867,120 - Atu3783 0.23 -3.1
867,122 + Atu3783 0.24 -5.7
867,217 - Atu3783 0.30 -3.3
867,227 - Atu3783 0.31 -2.2
867,227 - Atu3783 0.31 -2.8
867,236 - Atu3783 0.31 -4.0
867,308 - Atu3783 0.36 -6.0
867,442 - Atu3783 0.45 -5.7
867,447 + Atu3783 0.46 -4.0
867,447 + Atu3783 0.46 -3.0
867,455 - Atu3783 0.46 -3.2
867,455 - Atu3783 0.46 -4.2
867,591 - Atu3783 0.56 -3.3
867,595 + Atu3783 0.56 -6.2
867,615 + Atu3783 0.57 -6.5
867,615 + Atu3783 0.57 -3.8
867,623 - Atu3783 0.58 -5.0
867,623 - Atu3783 0.58 -5.3
867,623 - Atu3783 0.58 -4.5
867,655 - Atu3783 0.60 -4.4
867,667 + Atu3783 0.61 -1.0
867,675 + Atu3783 0.62 -6.6
867,689 + Atu3783 0.62 -4.9

Or see this region's nucleotide sequence