Strain Fitness in Agrobacterium fabrum C58 around Atu3035

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu3033 and Atu3034 are separated by 18 nucleotidesAtu3034 and Atu3035 are separated by 148 nucleotidesAtu3035 and Atu3036 are separated by 243 nucleotides Atu3033: Atu3033 - hypothetical protein, at 26,596 to 26,835 Atu3033 Atu3034: Atu3034 - ROK family transcriptional regulator, at 26,854 to 27,402 Atu3034 Atu3035: Atu3035 - two component response regulator, at 27,551 to 29,794 Atu3035 Atu3036: Atu3036 - dipeptide ABC transporter permease, at 30,038 to 31,066 Atu3036 Position (kb) 27 28 29 30Strain fitness (log2 ratio) -2 -1 0 1at 26.592 kb on - strandat 26.599 kb on - strandat 26.599 kb on - strandat 26.599 kb on - strandat 26.599 kb on - strandat 26.602 kb on + strandat 26.604 kb on - strandat 26.640 kb on + strand, within Atu3033at 26.681 kb on + strand, within Atu3033at 26.681 kb on + strand, within Atu3033at 26.699 kb on - strand, within Atu3033at 26.706 kb on + strand, within Atu3033at 26.706 kb on + strand, within Atu3033at 26.706 kb on + strand, within Atu3033at 26.706 kb on + strand, within Atu3033at 26.714 kb on - strand, within Atu3033at 26.714 kb on - strand, within Atu3033at 26.714 kb on - strand, within Atu3033at 26.829 kb on + strandat 26.829 kb on + strandat 26.837 kb on - strandat 26.879 kb on - strandat 26.888 kb on - strandat 27.004 kb on - strand, within Atu3034at 27.015 kb on + strand, within Atu3034at 27.186 kb on + strand, within Atu3034at 27.228 kb on + strand, within Atu3034at 27.236 kb on - strand, within Atu3034at 27.399 kb on - strandat 27.399 kb on - strandat 27.410 kb on - strandat 27.508 kb on - strandat 27.519 kb on - strandat 27.533 kb on - strandat 27.540 kb on + strandat 27.548 kb on - strandat 27.550 kb on + strandat 27.558 kb on - strandat 27.755 kb on + strandat 27.862 kb on + strand, within Atu3035at 27.881 kb on + strand, within Atu3035at 27.896 kb on - strand, within Atu3035at 27.896 kb on - strand, within Atu3035at 27.922 kb on - strand, within Atu3035at 27.967 kb on - strand, within Atu3035at 27.972 kb on + strand, within Atu3035at 27.995 kb on - strand, within Atu3035at 28.018 kb on + strand, within Atu3035at 28.018 kb on + strand, within Atu3035at 28.025 kb on - strand, within Atu3035at 28.026 kb on - strand, within Atu3035at 28.177 kb on - strand, within Atu3035at 28.177 kb on - strand, within Atu3035at 28.256 kb on + strand, within Atu3035at 28.284 kb on - strand, within Atu3035at 28.308 kb on - strand, within Atu3035at 28.365 kb on + strand, within Atu3035at 28.365 kb on + strand, within Atu3035at 28.365 kb on + strand, within Atu3035at 28.365 kb on + strand, within Atu3035at 28.373 kb on - strand, within Atu3035at 28.373 kb on - strand, within Atu3035at 28.373 kb on - strand, within Atu3035at 28.392 kb on - strand, within Atu3035at 28.427 kb on + strand, within Atu3035at 28.503 kb on + strand, within Atu3035at 28.511 kb on + strand, within Atu3035at 28.519 kb on - strand, within Atu3035at 28.519 kb on - strand, within Atu3035at 28.537 kb on + strand, within Atu3035at 28.700 kb on - strand, within Atu3035at 28.787 kb on - strand, within Atu3035at 28.842 kb on - strand, within Atu3035at 28.855 kb on - strand, within Atu3035at 28.865 kb on + strand, within Atu3035at 28.891 kb on + strand, within Atu3035at 28.892 kb on + strand, within Atu3035at 28.919 kb on + strand, within Atu3035at 28.924 kb on + strand, within Atu3035at 28.932 kb on - strand, within Atu3035at 28.932 kb on - strand, within Atu3035at 28.970 kb on - strand, within Atu3035at 29.013 kb on + strand, within Atu3035at 29.028 kb on + strand, within Atu3035at 29.028 kb on + strand, within Atu3035at 29.053 kb on - strand, within Atu3035at 29.100 kb on - strand, within Atu3035at 29.100 kb on - strand, within Atu3035at 29.212 kb on + strand, within Atu3035at 29.298 kb on - strand, within Atu3035at 29.375 kb on + strand, within Atu3035at 29.435 kb on + strand, within Atu3035at 29.618 kb on - strandat 29.676 kb on + strandat 29.678 kb on + strandat 29.762 kb on + strandat 29.762 kb on + strandat 29.772 kb on - strandat 29.896 kb on - strandat 30.091 kb on + strandat 30.358 kb on + strand, within Atu3036at 30.358 kb on + strand, within Atu3036at 30.358 kb on + strand, within Atu3036at 30.596 kb on - strand, within Atu3036at 30.758 kb on - strand, within Atu3036

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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26,592 - +0.0
26,599 - +0.0
26,599 - +0.8
26,599 - +0.6
26,599 - +0.3
26,602 + +0.3
26,604 - +1.5
26,640 + Atu3033 0.18 +0.6
26,681 + Atu3033 0.35 +0.9
26,681 + Atu3033 0.35 +0.7
26,699 - Atu3033 0.43 +0.4
26,706 + Atu3033 0.46 +0.6
26,706 + Atu3033 0.46 -0.1
26,706 + Atu3033 0.46 -0.0
26,706 + Atu3033 0.46 -0.7
26,714 - Atu3033 0.49 -0.7
26,714 - Atu3033 0.49 +0.7
26,714 - Atu3033 0.49 -0.3
26,829 + +0.4
26,829 + +0.3
26,837 - +0.4
26,879 - -0.5
26,888 - -0.5
27,004 - Atu3034 0.27 +0.3
27,015 + Atu3034 0.29 +1.0
27,186 + Atu3034 0.60 +0.0
27,228 + Atu3034 0.68 +0.2
27,236 - Atu3034 0.70 +0.1
27,399 - +0.1
27,399 - +0.5
27,410 - +0.5
27,508 - +1.2
27,519 - +0.3
27,533 - +0.5
27,540 + +0.5
27,548 - +0.2
27,550 + +0.3
27,558 - +0.7
27,755 + -0.9
27,862 + Atu3035 0.14 +0.6
27,881 + Atu3035 0.15 -0.4
27,896 - Atu3035 0.15 -1.6
27,896 - Atu3035 0.15 +0.7
27,922 - Atu3035 0.17 +0.2
27,967 - Atu3035 0.19 +0.4
27,972 + Atu3035 0.19 +0.8
27,995 - Atu3035 0.20 +1.0
28,018 + Atu3035 0.21 -0.4
28,018 + Atu3035 0.21 -0.7
28,025 - Atu3035 0.21 +0.5
28,026 - Atu3035 0.21 -0.2
28,177 - Atu3035 0.28 +0.6
28,177 - Atu3035 0.28 +0.8
28,256 + Atu3035 0.31 -0.2
28,284 - Atu3035 0.33 +0.7
28,308 - Atu3035 0.34 +0.1
28,365 + Atu3035 0.36 +0.7
28,365 + Atu3035 0.36 -0.2
28,365 + Atu3035 0.36 +0.3
28,365 + Atu3035 0.36 +0.8
28,373 - Atu3035 0.37 +0.4
28,373 - Atu3035 0.37 +0.2
28,373 - Atu3035 0.37 +0.2
28,392 - Atu3035 0.37 +0.1
28,427 + Atu3035 0.39 +0.2
28,503 + Atu3035 0.42 +0.7
28,511 + Atu3035 0.43 +0.6
28,519 - Atu3035 0.43 +0.9
28,519 - Atu3035 0.43 +0.4
28,537 + Atu3035 0.44 +0.4
28,700 - Atu3035 0.51 +0.3
28,787 - Atu3035 0.55 +0.2
28,842 - Atu3035 0.58 +0.2
28,855 - Atu3035 0.58 +0.3
28,865 + Atu3035 0.59 +0.2
28,891 + Atu3035 0.60 -0.6
28,892 + Atu3035 0.60 +0.6
28,919 + Atu3035 0.61 +0.4
28,924 + Atu3035 0.61 +1.1
28,932 - Atu3035 0.62 +0.5
28,932 - Atu3035 0.62 +0.1
28,970 - Atu3035 0.63 +0.5
29,013 + Atu3035 0.65 +0.3
29,028 + Atu3035 0.66 +0.5
29,028 + Atu3035 0.66 -1.2
29,053 - Atu3035 0.67 +0.1
29,100 - Atu3035 0.69 +0.3
29,100 - Atu3035 0.69 +0.4
29,212 + Atu3035 0.74 +0.9
29,298 - Atu3035 0.78 -0.3
29,375 + Atu3035 0.81 +0.3
29,435 + Atu3035 0.84 -0.6
29,618 - +0.0
29,676 + -1.2
29,678 + +0.3
29,762 + +0.2
29,762 + +0.5
29,772 - +0.6
29,896 - +0.8
30,091 + +0.1
30,358 + Atu3036 0.31 +0.6
30,358 + Atu3036 0.31 +0.5
30,358 + Atu3036 0.31 +0.5
30,596 - Atu3036 0.54 +0.7
30,758 - Atu3036 0.70 -1.9

Or see this region's nucleotide sequence