Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0578 and Atu0579 overlap by 10 nucleotides Atu0579 and Atu0580 are separated by 45 nucleotides Atu0580 and Atu0581 are separated by 157 nucleotides Atu0581 and Atu0582 are separated by 29 nucleotides Atu0582 and Atu0583 are separated by 15 nucleotides
Atu0578: Atu0578 - FlbT post-transcriptional regulator of flagellin, at 563,199 to 563,648
Atu0578
Atu0579: Atu0579 - hook formation protein, at 563,639 to 564,112
Atu0579
Atu0580: Atu0580 - flagellar biosynthetic protein, at 564,158 to 564,424
Atu0580
Atu0581: Atu0581 - flagellar biosynthesis protein, at 564,582 to 566,669
Atu0581
Atu0582: Atu0582 - flagellar biosynthetic protein FLIR, at 566,699 to 567,421
Atu0582
Atu0583: Atu0583 - hypothetical protein, at 567,437 to 567,856
Atu0583
Position (kb) 564
565
566
567 Strain fitness (log2 ratio) -1
0
1
2 at 563.674 kb on + strand at 563.674 kb on + strand at 563.674 kb on + strand at 563.677 kb on - strand at 563.704 kb on + strand, within Atu0579 at 563.728 kb on + strand, within Atu0579 at 563.728 kb on - strand, within Atu0579 at 563.774 kb on + strand, within Atu0579 at 563.778 kb on + strand, within Atu0579 at 563.863 kb on + strand, within Atu0579 at 563.874 kb on + strand, within Atu0579 at 563.881 kb on + strand, within Atu0579 at 563.888 kb on + strand, within Atu0579 at 564.113 kb on - strand at 564.160 kb on + strand at 564.173 kb on - strand at 564.204 kb on - strand, within Atu0580 at 564.252 kb on - strand, within Atu0580 at 564.264 kb on + strand, within Atu0580 at 564.479 kb on - strand at 564.523 kb on + strand at 564.523 kb on + strand at 564.614 kb on + strand at 564.617 kb on - strand at 564.697 kb on + strand at 564.701 kb on + strand at 564.745 kb on + strand at 564.774 kb on + strand at 564.839 kb on - strand, within Atu0581 at 565.003 kb on - strand, within Atu0581 at 565.034 kb on + strand, within Atu0581 at 565.047 kb on - strand, within Atu0581 at 565.047 kb on - strand, within Atu0581 at 565.312 kb on - strand, within Atu0581 at 565.336 kb on + strand, within Atu0581 at 565.456 kb on + strand, within Atu0581 at 565.456 kb on + strand, within Atu0581 at 565.459 kb on - strand, within Atu0581 at 565.554 kb on - strand, within Atu0581 at 565.634 kb on + strand, within Atu0581 at 565.652 kb on + strand, within Atu0581 at 565.675 kb on - strand, within Atu0581 at 565.767 kb on + strand, within Atu0581 at 565.767 kb on + strand, within Atu0581 at 565.775 kb on - strand, within Atu0581 at 565.782 kb on - strand, within Atu0581 at 565.782 kb on - strand, within Atu0581 at 565.816 kb on - strand, within Atu0581 at 566.003 kb on - strand, within Atu0581 at 566.019 kb on - strand, within Atu0581 at 566.085 kb on + strand, within Atu0581 at 566.110 kb on - strand, within Atu0581 at 566.122 kb on + strand, within Atu0581 at 566.130 kb on - strand, within Atu0581 at 566.204 kb on - strand, within Atu0581 at 566.267 kb on + strand, within Atu0581 at 566.290 kb on - strand, within Atu0581 at 566.295 kb on - strand, within Atu0581 at 566.299 kb on + strand, within Atu0581 at 566.333 kb on + strand, within Atu0581 at 566.341 kb on - strand, within Atu0581 at 566.358 kb on + strand, within Atu0581 at 566.441 kb on + strand, within Atu0581 at 566.467 kb on + strand at 566.538 kb on - strand at 566.563 kb on + strand at 566.627 kb on + strand at 566.627 kb on + strand at 566.635 kb on - strand at 566.642 kb on - strand at 566.721 kb on - strand at 566.772 kb on - strand, within Atu0582 at 566.801 kb on - strand, within Atu0582 at 566.821 kb on - strand, within Atu0582 at 566.825 kb on - strand, within Atu0582 at 566.830 kb on + strand, within Atu0582 at 566.841 kb on + strand, within Atu0582 at 566.841 kb on + strand, within Atu0582 at 566.841 kb on + strand, within Atu0582 at 566.849 kb on - strand, within Atu0582 at 566.915 kb on - strand, within Atu0582 at 566.959 kb on - strand, within Atu0582 at 566.968 kb on + strand, within Atu0582 at 566.971 kb on - strand, within Atu0582 at 567.079 kb on - strand, within Atu0582 at 567.101 kb on + strand, within Atu0582 at 567.189 kb on - strand, within Atu0582 at 567.264 kb on + strand, within Atu0582 at 567.296 kb on + strand, within Atu0582 at 567.383 kb on + strand at 567.443 kb on - strand at 567.463 kb on + strand at 567.471 kb on - strand at 567.518 kb on - strand, within Atu0583 at 567.585 kb on + strand, within Atu0583 at 567.588 kb on + strand, within Atu0583 at 567.619 kb on + strand, within Atu0583 at 567.619 kb on + strand, within Atu0583 at 567.627 kb on - strand, within Atu0583 at 567.627 kb on - strand, within Atu0583
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 563,674 + +0.7 563,674 + +1.5 563,674 + +1.8 563,677 - +0.2 563,704 + Atu0579 0.14 +0.4 563,728 + Atu0579 0.19 +0.2 563,728 - Atu0579 0.19 +1.4 563,774 + Atu0579 0.28 +0.1 563,778 + Atu0579 0.29 +0.9 563,863 + Atu0579 0.47 +0.3 563,874 + Atu0579 0.50 +0.1 563,881 + Atu0579 0.51 +0.3 563,888 + Atu0579 0.53 -0.1 564,113 - +0.5 564,160 + +0.2 564,173 - +1.2 564,204 - Atu0580 0.17 -0.2 564,252 - Atu0580 0.35 +0.1 564,264 + Atu0580 0.40 -0.1 564,479 - +0.2 564,523 + +0.6 564,523 + +0.9 564,614 + +0.3 564,617 - +1.3 564,697 + -0.0 564,701 + +0.2 564,745 + +0.4 564,774 + +0.4 564,839 - Atu0581 0.12 +0.7 565,003 - Atu0581 0.20 +0.3 565,034 + Atu0581 0.22 +0.2 565,047 - Atu0581 0.22 +0.8 565,047 - Atu0581 0.22 -0.3 565,312 - Atu0581 0.35 +0.3 565,336 + Atu0581 0.36 +0.4 565,456 + Atu0581 0.42 +0.8 565,456 + Atu0581 0.42 +0.2 565,459 - Atu0581 0.42 +0.2 565,554 - Atu0581 0.47 +0.2 565,634 + Atu0581 0.50 +0.5 565,652 + Atu0581 0.51 +0.5 565,675 - Atu0581 0.52 +0.6 565,767 + Atu0581 0.57 -0.1 565,767 + Atu0581 0.57 +0.8 565,775 - Atu0581 0.57 +0.1 565,782 - Atu0581 0.57 +0.5 565,782 - Atu0581 0.57 +0.4 565,816 - Atu0581 0.59 +2.2 566,003 - Atu0581 0.68 +1.3 566,019 - Atu0581 0.69 +0.2 566,085 + Atu0581 0.72 -0.5 566,110 - Atu0581 0.73 +0.8 566,122 + Atu0581 0.74 +0.4 566,130 - Atu0581 0.74 -0.2 566,204 - Atu0581 0.78 +1.0 566,267 + Atu0581 0.81 -0.5 566,290 - Atu0581 0.82 -0.1 566,295 - Atu0581 0.82 +0.0 566,299 + Atu0581 0.82 +1.1 566,333 + Atu0581 0.84 +0.9 566,341 - Atu0581 0.84 -1.3 566,358 + Atu0581 0.85 +0.4 566,441 + Atu0581 0.89 +0.3 566,467 + +0.2 566,538 - +0.6 566,563 + -0.0 566,627 + +0.3 566,627 + +1.0 566,635 - +0.3 566,642 - +0.3 566,721 - +0.2 566,772 - Atu0582 0.10 +0.1 566,801 - Atu0582 0.14 +0.1 566,821 - Atu0582 0.17 +0.3 566,825 - Atu0582 0.17 +0.4 566,830 + Atu0582 0.18 +0.4 566,841 + Atu0582 0.20 +0.5 566,841 + Atu0582 0.20 +0.2 566,841 + Atu0582 0.20 +0.8 566,849 - Atu0582 0.21 -0.3 566,915 - Atu0582 0.30 +0.6 566,959 - Atu0582 0.36 +0.7 566,968 + Atu0582 0.37 +0.1 566,971 - Atu0582 0.38 -0.1 567,079 - Atu0582 0.53 +0.1 567,101 + Atu0582 0.56 -0.0 567,189 - Atu0582 0.68 -0.1 567,264 + Atu0582 0.78 +0.4 567,296 + Atu0582 0.83 -0.2 567,383 + +0.7 567,443 - -1.2 567,463 + -1.0 567,471 - -0.6 567,518 - Atu0583 0.19 +0.3 567,585 + Atu0583 0.35 +0.8 567,588 + Atu0583 0.36 -0.3 567,619 + Atu0583 0.43 +0.0 567,619 + Atu0583 0.43 +0.2 567,627 - Atu0583 0.45 -0.6 567,627 - Atu0583 0.45 +0.5
Or see this region's nucleotide sequence