Strain Fitness in Agrobacterium fabrum C58 around Atu0569

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0567 and Atu0568 are separated by 279 nucleotidesAtu0568 and Atu0569 overlap by 4 nucleotidesAtu0569 and Atu0570 overlap by 4 nucleotides Atu0567: Atu0567 - flagellin protein FlaD, at 551,215 to 552,507 Atu0567 Atu0568: Atu0568 - hypothetical protein, at 552,787 to 553,443 Atu0568 Atu0569: Atu0569 - flagellar motor protein, PAL/OmpA family, at 553,440 to 554,741 Atu0569 Atu0570: Atu0570 - Chemotaxis protein, at 554,738 to 556,018 Atu0570 Position (kb) 553 554 555Strain fitness (log2 ratio) -1 0 1 2at 552.574 kb on - strandat 552.583 kb on + strandat 552.671 kb on - strandat 552.671 kb on - strandat 552.696 kb on + strandat 552.777 kb on - strandat 552.784 kb on + strandat 552.792 kb on - strandat 552.828 kb on + strandat 552.828 kb on + strandat 552.955 kb on - strand, within Atu0568at 553.035 kb on - strand, within Atu0568at 553.103 kb on + strand, within Atu0568at 553.218 kb on + strand, within Atu0568at 553.226 kb on - strand, within Atu0568at 553.243 kb on - strand, within Atu0568at 553.307 kb on - strand, within Atu0568at 553.307 kb on - strand, within Atu0568at 553.307 kb on - strand, within Atu0568at 553.307 kb on - strand, within Atu0568at 553.377 kb on + strand, within Atu0568at 553.377 kb on + strand, within Atu0568at 553.496 kb on + strandat 553.585 kb on + strand, within Atu0569at 553.595 kb on + strand, within Atu0569at 553.598 kb on - strand, within Atu0569at 553.616 kb on + strand, within Atu0569at 553.648 kb on + strand, within Atu0569at 553.648 kb on + strand, within Atu0569at 553.656 kb on - strand, within Atu0569at 553.766 kb on - strand, within Atu0569at 553.782 kb on + strand, within Atu0569at 553.796 kb on - strand, within Atu0569at 553.805 kb on - strand, within Atu0569at 553.847 kb on + strand, within Atu0569at 553.855 kb on - strand, within Atu0569at 553.892 kb on + strand, within Atu0569at 553.910 kb on + strand, within Atu0569at 554.048 kb on - strand, within Atu0569at 554.088 kb on + strand, within Atu0569at 554.095 kb on - strand, within Atu0569at 554.124 kb on + strand, within Atu0569at 554.212 kb on + strand, within Atu0569at 554.237 kb on + strand, within Atu0569at 554.285 kb on + strand, within Atu0569at 554.286 kb on + strand, within Atu0569at 554.448 kb on + strand, within Atu0569at 554.537 kb on + strand, within Atu0569at 554.544 kb on + strand, within Atu0569at 554.544 kb on + strand, within Atu0569at 554.566 kb on - strand, within Atu0569at 554.600 kb on - strand, within Atu0569at 554.686 kb on - strandat 554.854 kb on - strandat 554.881 kb on + strand, within Atu0570at 554.951 kb on + strand, within Atu0570at 554.951 kb on + strand, within Atu0570at 555.010 kb on + strand, within Atu0570at 555.013 kb on - strand, within Atu0570at 555.042 kb on + strand, within Atu0570at 555.042 kb on + strand, within Atu0570at 555.050 kb on - strand, within Atu0570at 555.104 kb on - strand, within Atu0570at 555.145 kb on + strand, within Atu0570at 555.184 kb on + strand, within Atu0570at 555.192 kb on - strand, within Atu0570at 555.261 kb on + strand, within Atu0570at 555.280 kb on + strand, within Atu0570at 555.340 kb on - strand, within Atu0570at 555.368 kb on + strand, within Atu0570at 555.373 kb on + strand, within Atu0570at 555.383 kb on - strand, within Atu0570at 555.479 kb on + strand, within Atu0570at 555.511 kb on + strand, within Atu0570at 555.511 kb on + strand, within Atu0570at 555.616 kb on + strand, within Atu0570at 555.632 kb on - strand, within Atu0570at 555.663 kb on + strand, within Atu0570at 555.690 kb on + strand, within Atu0570

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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552,574 - -0.5
552,583 + +0.8
552,671 - +0.3
552,671 - +0.7
552,696 + +0.1
552,777 - +0.0
552,784 + +1.1
552,792 - +0.6
552,828 + +0.5
552,828 + -0.2
552,955 - Atu0568 0.26 +2.2
553,035 - Atu0568 0.38 -0.1
553,103 + Atu0568 0.48 +0.5
553,218 + Atu0568 0.66 +0.1
553,226 - Atu0568 0.67 -1.1
553,243 - Atu0568 0.69 +0.6
553,307 - Atu0568 0.79 +0.1
553,307 - Atu0568 0.79 -1.1
553,307 - Atu0568 0.79 +0.6
553,307 - Atu0568 0.79 +0.5
553,377 + Atu0568 0.90 -0.0
553,377 + Atu0568 0.90 +0.9
553,496 + -0.3
553,585 + Atu0569 0.11 +0.9
553,595 + Atu0569 0.12 +0.4
553,598 - Atu0569 0.12 +0.2
553,616 + Atu0569 0.14 -0.1
553,648 + Atu0569 0.16 +0.4
553,648 + Atu0569 0.16 +0.6
553,656 - Atu0569 0.17 -0.1
553,766 - Atu0569 0.25 -0.1
553,782 + Atu0569 0.26 +0.2
553,796 - Atu0569 0.27 +0.4
553,805 - Atu0569 0.28 +0.4
553,847 + Atu0569 0.31 +0.6
553,855 - Atu0569 0.32 +0.5
553,892 + Atu0569 0.35 +0.1
553,910 + Atu0569 0.36 +0.1
554,048 - Atu0569 0.47 +0.5
554,088 + Atu0569 0.50 +0.8
554,095 - Atu0569 0.50 +0.5
554,124 + Atu0569 0.53 +0.6
554,212 + Atu0569 0.59 +0.4
554,237 + Atu0569 0.61 +0.1
554,285 + Atu0569 0.65 -0.2
554,286 + Atu0569 0.65 -0.2
554,448 + Atu0569 0.77 +0.2
554,537 + Atu0569 0.84 -1.0
554,544 + Atu0569 0.85 +0.7
554,544 + Atu0569 0.85 +0.3
554,566 - Atu0569 0.86 -0.0
554,600 - Atu0569 0.89 +1.3
554,686 - +0.2
554,854 - -0.7
554,881 + Atu0570 0.11 +1.0
554,951 + Atu0570 0.17 -0.2
554,951 + Atu0570 0.17 +0.4
555,010 + Atu0570 0.21 -0.3
555,013 - Atu0570 0.21 +0.6
555,042 + Atu0570 0.24 +0.2
555,042 + Atu0570 0.24 +0.7
555,050 - Atu0570 0.24 +0.2
555,104 - Atu0570 0.29 +0.4
555,145 + Atu0570 0.32 +0.4
555,184 + Atu0570 0.35 +1.1
555,192 - Atu0570 0.35 +0.3
555,261 + Atu0570 0.41 -1.3
555,280 + Atu0570 0.42 +0.6
555,340 - Atu0570 0.47 +0.1
555,368 + Atu0570 0.49 +0.4
555,373 + Atu0570 0.50 -0.0
555,383 - Atu0570 0.50 +0.6
555,479 + Atu0570 0.58 +0.1
555,511 + Atu0570 0.60 -0.1
555,511 + Atu0570 0.60 +0.3
555,616 + Atu0570 0.69 +0.1
555,632 - Atu0570 0.70 +0.2
555,663 + Atu0570 0.72 +0.8
555,690 + Atu0570 0.74 +0.7

Or see this region's nucleotide sequence