Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0561 and Atu0562 are separated by 63 nucleotides Atu0562 and Atu0563 are separated by 27 nucleotides Atu0563 and Atu0564 are separated by 125 nucleotides
Atu0561: Atu0561 - flagellar motor switch protein, at 546,623 to 547,582
Atu0561
Atu0562: Atu0562 - flagellar motor switch protein FliN, at 547,646 to 548,185
Atu0562
Atu0563: Atu0563 - flagellar motor switch protein FliG, at 548,213 to 549,256
Atu0563
Atu0564: Atu0564 - flagellar biosynthetic protein, at 549,382 to 550,464
Atu0564
Position (kb) 548
549
550 Strain fitness (log2 ratio) -1
0
1
2 at 547.230 kb on - strand, within Atu0561 at 547.243 kb on + strand, within Atu0561 at 547.251 kb on - strand, within Atu0561 at 547.251 kb on - strand, within Atu0561 at 547.335 kb on - strand, within Atu0561 at 547.335 kb on - strand, within Atu0561 at 547.347 kb on + strand, within Atu0561 at 547.347 kb on + strand, within Atu0561 at 547.473 kb on + strand, within Atu0561 at 547.473 kb on + strand, within Atu0561 at 547.473 kb on + strand, within Atu0561 at 547.578 kb on + strand at 547.578 kb on + strand at 547.632 kb on + strand at 547.728 kb on - strand, within Atu0562 at 547.823 kb on + strand, within Atu0562 at 547.909 kb on + strand, within Atu0562 at 547.909 kb on - strand, within Atu0562 at 548.050 kb on + strand, within Atu0562 at 548.094 kb on + strand, within Atu0562 at 548.117 kb on + strand, within Atu0562 at 548.204 kb on + strand at 548.207 kb on - strand at 548.299 kb on + strand at 548.369 kb on + strand, within Atu0563 at 548.410 kb on - strand, within Atu0563 at 548.471 kb on - strand, within Atu0563 at 548.497 kb on + strand, within Atu0563 at 548.502 kb on + strand, within Atu0563 at 548.510 kb on + strand, within Atu0563 at 548.510 kb on - strand, within Atu0563 at 548.510 kb on - strand, within Atu0563 at 548.520 kb on - strand, within Atu0563 at 548.542 kb on + strand, within Atu0563 at 548.564 kb on + strand, within Atu0563 at 548.578 kb on + strand, within Atu0563 at 548.684 kb on + strand, within Atu0563 at 548.684 kb on + strand, within Atu0563 at 548.725 kb on - strand, within Atu0563 at 548.732 kb on - strand, within Atu0563 at 548.871 kb on - strand, within Atu0563 at 548.871 kb on - strand, within Atu0563 at 548.875 kb on + strand, within Atu0563 at 548.895 kb on - strand, within Atu0563 at 548.959 kb on + strand, within Atu0563 at 548.977 kb on + strand, within Atu0563 at 548.977 kb on + strand, within Atu0563 at 549.024 kb on + strand, within Atu0563 at 549.055 kb on + strand, within Atu0563 at 549.135 kb on - strand, within Atu0563 at 549.275 kb on + strand at 549.396 kb on + strand at 549.396 kb on + strand at 549.397 kb on + strand at 549.405 kb on - strand at 549.413 kb on - strand at 549.608 kb on - strand, within Atu0564 at 549.628 kb on - strand, within Atu0564 at 549.650 kb on - strand, within Atu0564 at 549.715 kb on + strand, within Atu0564 at 549.715 kb on + strand, within Atu0564 at 549.803 kb on - strand, within Atu0564 at 549.820 kb on - strand, within Atu0564 at 549.989 kb on - strand, within Atu0564 at 550.034 kb on + strand, within Atu0564 at 550.034 kb on + strand, within Atu0564 at 550.059 kb on + strand, within Atu0564 at 550.075 kb on + strand, within Atu0564 at 550.075 kb on + strand, within Atu0564 at 550.076 kb on + strand, within Atu0564 at 550.092 kb on + strand, within Atu0564 at 550.104 kb on + strand, within Atu0564 at 550.182 kb on + strand, within Atu0564 at 550.203 kb on + strand, within Atu0564 at 550.221 kb on - strand, within Atu0564 at 550.221 kb on - strand, within Atu0564
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 547,230 - Atu0561 0.63 +0.1 547,243 + Atu0561 0.65 +0.6 547,251 - Atu0561 0.65 -0.7 547,251 - Atu0561 0.65 +0.6 547,335 - Atu0561 0.74 +0.4 547,335 - Atu0561 0.74 -0.1 547,347 + Atu0561 0.75 +0.3 547,347 + Atu0561 0.75 +0.3 547,473 + Atu0561 0.89 +0.3 547,473 + Atu0561 0.89 +0.5 547,473 + Atu0561 0.89 +0.3 547,578 + -0.3 547,578 + -0.2 547,632 + +0.8 547,728 - Atu0562 0.15 +0.6 547,823 + Atu0562 0.33 -0.1 547,909 + Atu0562 0.49 -0.5 547,909 - Atu0562 0.49 +0.1 548,050 + Atu0562 0.75 -0.9 548,094 + Atu0562 0.83 +0.2 548,117 + Atu0562 0.87 +0.4 548,204 + +0.9 548,207 - +0.5 548,299 + -0.0 548,369 + Atu0563 0.15 +0.4 548,410 - Atu0563 0.19 +0.5 548,471 - Atu0563 0.25 +0.5 548,497 + Atu0563 0.27 +2.0 548,502 + Atu0563 0.28 +0.6 548,510 + Atu0563 0.28 +0.4 548,510 - Atu0563 0.28 +0.3 548,510 - Atu0563 0.28 +0.3 548,520 - Atu0563 0.29 +0.4 548,542 + Atu0563 0.32 +1.4 548,564 + Atu0563 0.34 +0.6 548,578 + Atu0563 0.35 +0.9 548,684 + Atu0563 0.45 +1.2 548,684 + Atu0563 0.45 +0.6 548,725 - Atu0563 0.49 +0.5 548,732 - Atu0563 0.50 -0.0 548,871 - Atu0563 0.63 -0.2 548,871 - Atu0563 0.63 +1.5 548,875 + Atu0563 0.63 +0.1 548,895 - Atu0563 0.65 -0.6 548,959 + Atu0563 0.71 +0.6 548,977 + Atu0563 0.73 -0.4 548,977 + Atu0563 0.73 +0.5 549,024 + Atu0563 0.78 +0.1 549,055 + Atu0563 0.81 +0.9 549,135 - Atu0563 0.88 -0.0 549,275 + -0.1 549,396 + +0.5 549,396 + +0.0 549,397 + +0.2 549,405 - +0.2 549,413 - +0.5 549,608 - Atu0564 0.21 +0.4 549,628 - Atu0564 0.23 +0.3 549,650 - Atu0564 0.25 +0.8 549,715 + Atu0564 0.31 -0.1 549,715 + Atu0564 0.31 -0.2 549,803 - Atu0564 0.39 +0.4 549,820 - Atu0564 0.40 +0.3 549,989 - Atu0564 0.56 +0.6 550,034 + Atu0564 0.60 +0.4 550,034 + Atu0564 0.60 +0.1 550,059 + Atu0564 0.63 +0.4 550,075 + Atu0564 0.64 -0.2 550,075 + Atu0564 0.64 +0.8 550,076 + Atu0564 0.64 -0.7 550,092 + Atu0564 0.66 -0.2 550,104 + Atu0564 0.67 +1.0 550,182 + Atu0564 0.74 +0.3 550,203 + Atu0564 0.76 +0.0 550,221 - Atu0564 0.77 +0.2 550,221 - Atu0564 0.77 +0.3
Or see this region's nucleotide sequence