Experiment: Lactulose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0555 and Atu0556 are separated by 170 nucleotides Atu0556 and Atu0557 are separated by 163 nucleotides Atu0557 and Atu0558 are separated by 11 nucleotides Atu0558 and Atu0559 are separated by 1 nucleotides
Atu0555: Atu0555 - flagellar basal-body rod protein FlgB, at 541,482 to 541,874
Atu0555
Atu0556: Atu0556 - hypothetical protein, at 542,045 to 542,449
Atu0556
Atu0557: Atu0557 - flagellum-specific ATP synthase, at 542,613 to 544,034
Atu0557
Atu0558: Atu0558 - flagellar basal body rod protein, at 544,046 to 544,780
Atu0558
Atu0559: Atu0559 - hypothetical protein, at 544,782 to 545,417
Atu0559
Position (kb) 542
543
544
545 Strain fitness (log2 ratio) -1
0
1
2 at 541.691 kb on + strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.693 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.699 kb on - strand, within Atu0555 at 541.704 kb on - strand, within Atu0555 at 541.728 kb on - strand, within Atu0555 at 541.777 kb on - strand, within Atu0555 at 541.785 kb on - strand, within Atu0555 at 541.895 kb on + strand at 541.917 kb on - strand at 542.097 kb on + strand, within Atu0556 at 542.105 kb on - strand, within Atu0556 at 542.150 kb on + strand, within Atu0556 at 542.185 kb on - strand, within Atu0556 at 542.198 kb on + strand, within Atu0556 at 542.283 kb on - strand, within Atu0556 at 542.383 kb on - strand, within Atu0556 at 542.583 kb on + strand at 542.610 kb on + strand at 542.642 kb on - strand at 542.662 kb on - strand at 542.766 kb on + strand, within Atu0557 at 542.790 kb on - strand, within Atu0557 at 542.845 kb on + strand, within Atu0557 at 542.872 kb on - strand, within Atu0557 at 542.925 kb on + strand, within Atu0557 at 542.933 kb on - strand, within Atu0557 at 542.956 kb on - strand, within Atu0557 at 543.039 kb on + strand, within Atu0557 at 543.047 kb on - strand, within Atu0557 at 543.083 kb on + strand, within Atu0557 at 543.091 kb on - strand, within Atu0557 at 543.091 kb on - strand, within Atu0557 at 543.091 kb on - strand, within Atu0557 at 543.091 kb on - strand, within Atu0557 at 543.105 kb on + strand, within Atu0557 at 543.130 kb on + strand, within Atu0557 at 543.138 kb on - strand, within Atu0557 at 543.288 kb on - strand, within Atu0557 at 543.288 kb on - strand, within Atu0557 at 543.298 kb on - strand, within Atu0557 at 543.464 kb on + strand, within Atu0557 at 543.472 kb on - strand, within Atu0557 at 543.494 kb on + strand, within Atu0557 at 543.535 kb on + strand, within Atu0557 at 543.558 kb on - strand, within Atu0557 at 543.673 kb on + strand, within Atu0557 at 543.673 kb on + strand, within Atu0557 at 543.714 kb on - strand, within Atu0557 at 543.752 kb on + strand, within Atu0557 at 543.755 kb on - strand, within Atu0557 at 543.803 kb on + strand, within Atu0557 at 543.803 kb on + strand, within Atu0557 at 543.926 kb on + strand at 543.945 kb on - strand at 544.145 kb on - strand, within Atu0558 at 544.181 kb on - strand, within Atu0558 at 544.188 kb on + strand, within Atu0558 at 544.191 kb on - strand, within Atu0558 at 544.193 kb on + strand, within Atu0558 at 544.196 kb on - strand, within Atu0558 at 544.201 kb on - strand, within Atu0558 at 544.201 kb on - strand, within Atu0558 at 544.206 kb on - strand, within Atu0558 at 544.296 kb on + strand, within Atu0558 at 544.304 kb on + strand, within Atu0558 at 544.381 kb on + strand, within Atu0558 at 544.484 kb on + strand, within Atu0558 at 544.558 kb on + strand, within Atu0558 at 544.568 kb on + strand, within Atu0558 at 544.568 kb on + strand, within Atu0558 at 544.576 kb on - strand, within Atu0558 at 544.697 kb on - strand, within Atu0558 at 544.754 kb on - strand at 544.777 kb on + strand at 544.823 kb on + strand at 544.832 kb on - strand at 544.890 kb on + strand, within Atu0559 at 544.982 kb on - strand, within Atu0559
Per-strain Table
Position Strand Gene LocusTag Fraction Lactulose (C) remove 541,691 + Atu0555 0.53 +0.3 541,693 - Atu0555 0.54 +1.3 541,693 - Atu0555 0.54 +0.0 541,699 - Atu0555 0.55 +0.2 541,699 - Atu0555 0.55 +0.3 541,704 - Atu0555 0.56 +0.6 541,728 - Atu0555 0.63 +0.5 541,777 - Atu0555 0.75 +0.3 541,785 - Atu0555 0.77 +0.5 541,895 + +1.2 541,917 - +0.4 542,097 + Atu0556 0.13 +0.2 542,105 - Atu0556 0.15 -0.2 542,150 + Atu0556 0.26 -0.3 542,185 - Atu0556 0.35 -0.1 542,198 + Atu0556 0.38 -0.2 542,283 - Atu0556 0.59 +0.3 542,383 - Atu0556 0.83 -0.8 542,583 + -0.5 542,610 + -0.2 542,642 - +0.8 542,662 - +0.5 542,766 + Atu0557 0.11 +1.0 542,790 - Atu0557 0.12 +0.6 542,845 + Atu0557 0.16 +0.4 542,872 - Atu0557 0.18 +0.5 542,925 + Atu0557 0.22 -0.1 542,933 - Atu0557 0.23 -0.6 542,956 - Atu0557 0.24 -0.9 543,039 + Atu0557 0.30 -0.1 543,047 - Atu0557 0.31 -0.9 543,083 + Atu0557 0.33 +0.7 543,091 - Atu0557 0.34 +0.4 543,091 - Atu0557 0.34 +0.3 543,091 - Atu0557 0.34 +0.7 543,091 - Atu0557 0.34 +0.2 543,105 + Atu0557 0.35 +0.5 543,130 + Atu0557 0.36 +0.8 543,138 - Atu0557 0.37 -0.7 543,288 - Atu0557 0.47 +2.1 543,288 - Atu0557 0.47 +0.4 543,298 - Atu0557 0.48 +0.9 543,464 + Atu0557 0.60 +0.0 543,472 - Atu0557 0.60 +0.5 543,494 + Atu0557 0.62 +0.4 543,535 + Atu0557 0.65 +0.5 543,558 - Atu0557 0.66 +0.2 543,673 + Atu0557 0.75 +0.4 543,673 + Atu0557 0.75 +0.1 543,714 - Atu0557 0.77 +1.1 543,752 + Atu0557 0.80 -0.9 543,755 - Atu0557 0.80 +0.4 543,803 + Atu0557 0.84 +0.7 543,803 + Atu0557 0.84 +0.1 543,926 + +0.4 543,945 - +0.2 544,145 - Atu0558 0.13 +0.2 544,181 - Atu0558 0.18 +0.4 544,188 + Atu0558 0.19 +1.2 544,191 - Atu0558 0.20 +0.1 544,193 + Atu0558 0.20 +0.3 544,196 - Atu0558 0.20 -0.8 544,201 - Atu0558 0.21 +0.4 544,201 - Atu0558 0.21 +0.7 544,206 - Atu0558 0.22 +0.5 544,296 + Atu0558 0.34 +0.3 544,304 + Atu0558 0.35 +0.8 544,381 + Atu0558 0.46 +0.2 544,484 + Atu0558 0.60 +2.5 544,558 + Atu0558 0.70 +0.8 544,568 + Atu0558 0.71 -0.1 544,568 + Atu0558 0.71 +0.3 544,576 - Atu0558 0.72 +1.6 544,697 - Atu0558 0.89 +0.3 544,754 - +0.8 544,777 + +0.3 544,823 + +0.1 544,832 - +0.6 544,890 + Atu0559 0.17 +0.2 544,982 - Atu0559 0.31 -0.1
Or see this region's nucleotide sequence