Strain Fitness in Agrobacterium fabrum C58 around Atu0552

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0550 and Atu0551 overlap by 4 nucleotidesAtu0551 and Atu0552 are separated by 20 nucleotidesAtu0552 and Atu0553 are separated by 18 nucleotidesAtu0553 and Atu0554 overlap by 4 nucleotidesAtu0554 and Atu0555 are separated by 3 nucleotides Atu0550: Atu0550 - flagellar P-ring protein precursor, at 538,290 to 539,411 Atu0550 Atu0551: Atu0551 - flagellar protein FLGA precursor, at 539,408 to 539,896 Atu0551 Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705 Atu0552 Atu0553: Atu0553 - flagellar hook-basal body complex protein, at 540,724 to 541,062 Atu0553 Atu0554: Atu0554 - flagellar basal-body rod protein, at 541,059 to 541,478 Atu0554 Atu0555: Atu0555 - flagellar basal-body rod protein FlgB, at 541,482 to 541,874 Atu0555 Position (kb) 539 540 541Strain fitness (log2 ratio) -1 0 1 2at 538.917 kb on - strand, within Atu0550at 538.946 kb on - strand, within Atu0550at 538.984 kb on + strand, within Atu0550at 538.984 kb on + strand, within Atu0550at 538.992 kb on - strand, within Atu0550at 538.992 kb on - strand, within Atu0550at 539.017 kb on + strand, within Atu0550at 539.025 kb on - strand, within Atu0550at 539.075 kb on + strand, within Atu0550at 539.076 kb on - strand, within Atu0550at 539.087 kb on + strand, within Atu0550at 539.095 kb on - strand, within Atu0550at 539.146 kb on + strand, within Atu0550at 539.146 kb on + strand, within Atu0550at 539.154 kb on - strand, within Atu0550at 539.154 kb on - strand, within Atu0550at 539.197 kb on + strand, within Atu0550at 539.205 kb on - strand, within Atu0550at 539.207 kb on - strand, within Atu0550at 539.255 kb on - strand, within Atu0550at 539.262 kb on - strand, within Atu0550at 539.329 kb on + strandat 539.337 kb on - strandat 539.361 kb on + strandat 539.366 kb on + strandat 539.366 kb on + strandat 539.384 kb on - strandat 539.430 kb on + strandat 539.438 kb on + strandat 539.446 kb on - strandat 539.480 kb on + strand, within Atu0551at 539.572 kb on + strand, within Atu0551at 539.580 kb on - strand, within Atu0551at 539.675 kb on + strand, within Atu0551at 539.758 kb on + strand, within Atu0551at 539.852 kb on + strandat 539.874 kb on + strandat 539.899 kb on - strandat 539.962 kb on + strandat 540.037 kb on + strand, within Atu0552at 540.059 kb on + strand, within Atu0552at 540.243 kb on - strand, within Atu0552at 540.265 kb on - strand, within Atu0552at 540.369 kb on + strand, within Atu0552at 540.411 kb on - strand, within Atu0552at 540.411 kb on - strand, within Atu0552at 540.417 kb on + strand, within Atu0552at 540.461 kb on + strand, within Atu0552at 540.467 kb on - strand, within Atu0552at 540.541 kb on + strand, within Atu0552at 540.583 kb on + strand, within Atu0552at 540.617 kb on + strand, within Atu0552at 540.617 kb on + strand, within Atu0552at 540.625 kb on - strand, within Atu0552at 540.648 kb on + strandat 540.698 kb on + strandat 540.722 kb on + strandat 540.724 kb on - strandat 540.744 kb on + strandat 540.744 kb on + strandat 540.865 kb on - strand, within Atu0553at 540.938 kb on + strand, within Atu0553at 540.942 kb on - strand, within Atu0553at 540.951 kb on + strand, within Atu0553at 540.964 kb on - strand, within Atu0553at 540.972 kb on - strand, within Atu0553at 540.994 kb on - strand, within Atu0553at 541.037 kb on - strandat 541.119 kb on + strand, within Atu0554at 541.300 kb on + strand, within Atu0554at 541.316 kb on + strand, within Atu0554at 541.319 kb on - strand, within Atu0554at 541.347 kb on + strand, within Atu0554at 541.360 kb on - strand, within Atu0554at 541.417 kb on + strand, within Atu0554at 541.423 kb on - strand, within Atu0554at 541.423 kb on - strand, within Atu0554at 541.425 kb on - strand, within Atu0554at 541.487 kb on + strandat 541.519 kb on + strandat 541.536 kb on - strand, within Atu0555at 541.567 kb on + strand, within Atu0555at 541.570 kb on - strand, within Atu0555at 541.691 kb on + strand, within Atu0555at 541.693 kb on - strand, within Atu0555at 541.693 kb on - strand, within Atu0555at 541.699 kb on - strand, within Atu0555at 541.699 kb on - strand, within Atu0555at 541.704 kb on - strand, within Atu0555

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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538,917 - Atu0550 0.56 +0.6
538,946 - Atu0550 0.58 +0.3
538,984 + Atu0550 0.62 +0.0
538,984 + Atu0550 0.62 +0.2
538,992 - Atu0550 0.63 +0.5
538,992 - Atu0550 0.63 +1.8
539,017 + Atu0550 0.65 +0.3
539,025 - Atu0550 0.66 +1.4
539,075 + Atu0550 0.70 +0.1
539,076 - Atu0550 0.70 +0.9
539,087 + Atu0550 0.71 -0.2
539,095 - Atu0550 0.72 +0.4
539,146 + Atu0550 0.76 +0.3
539,146 + Atu0550 0.76 +0.2
539,154 - Atu0550 0.77 +0.8
539,154 - Atu0550 0.77 -0.1
539,197 + Atu0550 0.81 +1.0
539,205 - Atu0550 0.82 -0.6
539,207 - Atu0550 0.82 +0.6
539,255 - Atu0550 0.86 -0.3
539,262 - Atu0550 0.87 +0.2
539,329 + +0.4
539,337 - +0.4
539,361 + +0.4
539,366 + +0.5
539,366 + +2.3
539,384 - -0.3
539,430 + +0.9
539,438 + +0.2
539,446 - +0.4
539,480 + Atu0551 0.15 +0.6
539,572 + Atu0551 0.34 +0.4
539,580 - Atu0551 0.35 +0.8
539,675 + Atu0551 0.55 +0.4
539,758 + Atu0551 0.72 -1.0
539,852 + +1.3
539,874 + +0.7
539,899 - +0.4
539,962 + +0.4
540,037 + Atu0552 0.15 +0.2
540,059 + Atu0552 0.18 +0.4
540,243 - Atu0552 0.41 +0.5
540,265 - Atu0552 0.44 +0.2
540,369 + Atu0552 0.57 +0.7
540,411 - Atu0552 0.63 +0.4
540,411 - Atu0552 0.63 -0.2
540,417 + Atu0552 0.63 +0.4
540,461 + Atu0552 0.69 +0.1
540,467 - Atu0552 0.70 +0.2
540,541 + Atu0552 0.79 +0.3
540,583 + Atu0552 0.84 +0.6
540,617 + Atu0552 0.89 +0.9
540,617 + Atu0552 0.89 +0.8
540,625 - Atu0552 0.90 +0.2
540,648 + +0.4
540,698 + -0.2
540,722 + +0.4
540,724 - +0.0
540,744 + +0.4
540,744 + -0.4
540,865 - Atu0553 0.42 +0.3
540,938 + Atu0553 0.63 -0.3
540,942 - Atu0553 0.64 +0.2
540,951 + Atu0553 0.67 +0.5
540,964 - Atu0553 0.71 +0.4
540,972 - Atu0553 0.73 -0.3
540,994 - Atu0553 0.80 +0.4
541,037 - -0.3
541,119 + Atu0554 0.14 +0.1
541,300 + Atu0554 0.57 +0.5
541,316 + Atu0554 0.61 -0.3
541,319 - Atu0554 0.62 -0.0
541,347 + Atu0554 0.69 +0.4
541,360 - Atu0554 0.72 -1.0
541,417 + Atu0554 0.85 +0.3
541,423 - Atu0554 0.87 +0.2
541,423 - Atu0554 0.87 -0.8
541,425 - Atu0554 0.87 +0.8
541,487 + +0.3
541,519 + +0.4
541,536 - Atu0555 0.14 +0.2
541,567 + Atu0555 0.22 -0.1
541,570 - Atu0555 0.22 +0.5
541,691 + Atu0555 0.53 +0.3
541,693 - Atu0555 0.54 +1.3
541,693 - Atu0555 0.54 +0.0
541,699 - Atu0555 0.55 +0.2
541,699 - Atu0555 0.55 +0.3
541,704 - Atu0555 0.56 +0.6

Or see this region's nucleotide sequence