Strain Fitness in Agrobacterium fabrum C58 around Atu0550

Experiment: Lactulose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntAtu0548 and Atu0549 overlap by 4 nucleotidesAtu0549 and Atu0550 overlap by 4 nucleotidesAtu0550 and Atu0551 overlap by 4 nucleotidesAtu0551 and Atu0552 are separated by 20 nucleotides Atu0548: Atu0548 - flagellar L-ring protein precursor, at 537,041 to 537,760 Atu0548 Atu0549: Atu0549 - hypothetical protein, at 537,757 to 538,293 Atu0549 Atu0550: Atu0550 - flagellar P-ring protein precursor, at 538,290 to 539,411 Atu0550 Atu0551: Atu0551 - flagellar protein FLGA precursor, at 539,408 to 539,896 Atu0551 Atu0552: Atu0552 - flagellar basal-body rod protein, at 539,917 to 540,705 Atu0552 Position (kb) 538 539 540Strain fitness (log2 ratio) -1 0 1 2at 537.304 kb on + strand, within Atu0548at 537.320 kb on + strand, within Atu0548at 537.327 kb on + strand, within Atu0548at 537.327 kb on + strand, within Atu0548at 537.327 kb on + strand, within Atu0548at 537.327 kb on + strand, within Atu0548at 537.333 kb on + strand, within Atu0548at 537.333 kb on + strand, within Atu0548at 537.335 kb on - strand, within Atu0548at 537.341 kb on - strand, within Atu0548at 537.351 kb on - strand, within Atu0548at 537.422 kb on + strand, within Atu0548at 537.494 kb on - strand, within Atu0548at 537.521 kb on - strand, within Atu0548at 537.534 kb on + strand, within Atu0548at 537.534 kb on + strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.542 kb on - strand, within Atu0548at 537.606 kb on - strand, within Atu0548at 537.622 kb on - strand, within Atu0548at 537.831 kb on - strand, within Atu0549at 537.846 kb on + strand, within Atu0549at 538.007 kb on + strand, within Atu0549at 538.015 kb on - strand, within Atu0549at 538.046 kb on + strand, within Atu0549at 538.066 kb on + strand, within Atu0549at 538.100 kb on + strand, within Atu0549at 538.108 kb on - strand, within Atu0549at 538.108 kb on - strand, within Atu0549at 538.108 kb on - strand, within Atu0549at 538.313 kb on + strandat 538.406 kb on + strand, within Atu0550at 538.430 kb on + strand, within Atu0550at 538.506 kb on - strand, within Atu0550at 538.525 kb on + strand, within Atu0550at 538.532 kb on + strand, within Atu0550at 538.555 kb on - strand, within Atu0550at 538.562 kb on - strand, within Atu0550at 538.565 kb on + strand, within Atu0550at 538.598 kb on - strand, within Atu0550at 538.633 kb on + strand, within Atu0550at 538.685 kb on + strand, within Atu0550at 538.685 kb on + strand, within Atu0550at 538.693 kb on - strand, within Atu0550at 538.770 kb on + strand, within Atu0550at 538.771 kb on - strand, within Atu0550at 538.917 kb on - strand, within Atu0550at 538.946 kb on - strand, within Atu0550at 538.984 kb on + strand, within Atu0550at 538.984 kb on + strand, within Atu0550at 538.992 kb on - strand, within Atu0550at 538.992 kb on - strand, within Atu0550at 539.017 kb on + strand, within Atu0550at 539.025 kb on - strand, within Atu0550at 539.075 kb on + strand, within Atu0550at 539.076 kb on - strand, within Atu0550at 539.087 kb on + strand, within Atu0550at 539.095 kb on - strand, within Atu0550at 539.146 kb on + strand, within Atu0550at 539.146 kb on + strand, within Atu0550at 539.154 kb on - strand, within Atu0550at 539.154 kb on - strand, within Atu0550at 539.197 kb on + strand, within Atu0550at 539.205 kb on - strand, within Atu0550at 539.207 kb on - strand, within Atu0550at 539.255 kb on - strand, within Atu0550at 539.262 kb on - strand, within Atu0550at 539.329 kb on + strandat 539.337 kb on - strandat 539.361 kb on + strandat 539.366 kb on + strandat 539.366 kb on + strandat 539.384 kb on - strandat 539.430 kb on + strandat 539.438 kb on + strandat 539.446 kb on - strandat 539.480 kb on + strand, within Atu0551at 539.572 kb on + strand, within Atu0551at 539.580 kb on - strand, within Atu0551at 539.675 kb on + strand, within Atu0551at 539.758 kb on + strand, within Atu0551at 539.852 kb on + strandat 539.874 kb on + strandat 539.899 kb on - strandat 539.962 kb on + strandat 540.037 kb on + strand, within Atu0552at 540.059 kb on + strand, within Atu0552at 540.243 kb on - strand, within Atu0552at 540.265 kb on - strand, within Atu0552at 540.369 kb on + strand, within Atu0552at 540.411 kb on - strand, within Atu0552at 540.411 kb on - strand, within Atu0552

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Per-strain Table

Position Strand Gene LocusTag Fraction Lactulose (C)
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537,304 + Atu0548 0.37 +0.0
537,320 + Atu0548 0.39 +0.2
537,327 + Atu0548 0.40 -0.4
537,327 + Atu0548 0.40 +1.0
537,327 + Atu0548 0.40 +0.3
537,327 + Atu0548 0.40 +0.3
537,333 + Atu0548 0.41 +0.4
537,333 + Atu0548 0.41 +0.2
537,335 - Atu0548 0.41 +0.6
537,341 - Atu0548 0.42 +1.4
537,351 - Atu0548 0.43 +0.4
537,422 + Atu0548 0.53 +0.3
537,494 - Atu0548 0.63 +0.3
537,521 - Atu0548 0.67 +0.4
537,534 + Atu0548 0.68 +0.3
537,534 + Atu0548 0.68 -0.1
537,542 - Atu0548 0.70 +0.4
537,542 - Atu0548 0.70 -0.1
537,542 - Atu0548 0.70 +1.3
537,542 - Atu0548 0.70 +0.5
537,542 - Atu0548 0.70 +0.2
537,542 - Atu0548 0.70 +0.6
537,606 - Atu0548 0.78 -0.4
537,622 - Atu0548 0.81 -0.0
537,831 - Atu0549 0.14 +0.5
537,846 + Atu0549 0.17 +0.1
538,007 + Atu0549 0.47 -0.5
538,015 - Atu0549 0.48 -0.7
538,046 + Atu0549 0.54 +0.3
538,066 + Atu0549 0.58 +0.1
538,100 + Atu0549 0.64 +0.2
538,108 - Atu0549 0.65 +0.3
538,108 - Atu0549 0.65 +1.1
538,108 - Atu0549 0.65 +0.2
538,313 + +0.1
538,406 + Atu0550 0.10 +0.8
538,430 + Atu0550 0.12 +0.2
538,506 - Atu0550 0.19 -0.4
538,525 + Atu0550 0.21 +0.3
538,532 + Atu0550 0.22 +0.6
538,555 - Atu0550 0.24 +0.4
538,562 - Atu0550 0.24 +0.4
538,565 + Atu0550 0.25 +0.4
538,598 - Atu0550 0.27 +0.7
538,633 + Atu0550 0.31 +1.0
538,685 + Atu0550 0.35 +0.6
538,685 + Atu0550 0.35 +0.0
538,693 - Atu0550 0.36 +0.6
538,770 + Atu0550 0.43 +0.2
538,771 - Atu0550 0.43 +0.1
538,917 - Atu0550 0.56 +0.6
538,946 - Atu0550 0.58 +0.3
538,984 + Atu0550 0.62 +0.0
538,984 + Atu0550 0.62 +0.2
538,992 - Atu0550 0.63 +0.5
538,992 - Atu0550 0.63 +1.8
539,017 + Atu0550 0.65 +0.3
539,025 - Atu0550 0.66 +1.4
539,075 + Atu0550 0.70 +0.1
539,076 - Atu0550 0.70 +0.9
539,087 + Atu0550 0.71 -0.2
539,095 - Atu0550 0.72 +0.4
539,146 + Atu0550 0.76 +0.3
539,146 + Atu0550 0.76 +0.2
539,154 - Atu0550 0.77 +0.8
539,154 - Atu0550 0.77 -0.1
539,197 + Atu0550 0.81 +1.0
539,205 - Atu0550 0.82 -0.6
539,207 - Atu0550 0.82 +0.6
539,255 - Atu0550 0.86 -0.3
539,262 - Atu0550 0.87 +0.2
539,329 + +0.4
539,337 - +0.4
539,361 + +0.4
539,366 + +0.5
539,366 + +2.3
539,384 - -0.3
539,430 + +0.9
539,438 + +0.2
539,446 - +0.4
539,480 + Atu0551 0.15 +0.6
539,572 + Atu0551 0.34 +0.4
539,580 - Atu0551 0.35 +0.8
539,675 + Atu0551 0.55 +0.4
539,758 + Atu0551 0.72 -1.0
539,852 + +1.3
539,874 + +0.7
539,899 - +0.4
539,962 + +0.4
540,037 + Atu0552 0.15 +0.2
540,059 + Atu0552 0.18 +0.4
540,243 - Atu0552 0.41 +0.5
540,265 - Atu0552 0.44 +0.2
540,369 + Atu0552 0.57 +0.7
540,411 - Atu0552 0.63 +0.4
540,411 - Atu0552 0.63 -0.2

Or see this region's nucleotide sequence