Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_4048

Experiment: KB

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_4047 and Psyr_4048 are separated by 234 nucleotidesPsyr_4048 and Psyr_4049 overlap by 1 nucleotidesPsyr_4049 and Psyr_4050 overlap by 43 nucleotides Psyr_4047: Psyr_4047 - Beta-lactamase, at 4,830,485 to 4,831,591 _4047 Psyr_4048: Psyr_4048 - ornithine-acyl[acyl carrier protein] N-acyltransferase, at 4,831,826 to 4,832,581 _4048 Psyr_4049: Psyr_4049 - lyso-ornithine lipid acyltransferase, at 4,832,581 to 4,833,375 _4049 Psyr_4050: Psyr_4050 - Protein of unknown function DUF479, at 4,833,333 to 4,833,932 _4050 Position (kb) 4831 4832 4833Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 4830.861 kb on + strand, within Psyr_4047at 4830.861 kb on + strand, within Psyr_4047at 4830.861 kb on + strand, within Psyr_4047at 4830.861 kb on + strand, within Psyr_4047at 4830.861 kb on + strand, within Psyr_4047at 4830.861 kb on + strand, within Psyr_4047at 4830.862 kb on - strand, within Psyr_4047at 4830.862 kb on - strand, within Psyr_4047at 4830.862 kb on - strand, within Psyr_4047at 4830.862 kb on - strand, within Psyr_4047at 4830.862 kb on - strand, within Psyr_4047at 4830.862 kb on - strand, within Psyr_4047at 4830.862 kb on - strand, within Psyr_4047at 4830.868 kb on - strand, within Psyr_4047at 4830.868 kb on - strand, within Psyr_4047at 4830.878 kb on + strand, within Psyr_4047at 4830.879 kb on - strand, within Psyr_4047at 4830.886 kb on + strand, within Psyr_4047at 4831.032 kb on + strand, within Psyr_4047at 4831.032 kb on + strand, within Psyr_4047at 4831.032 kb on + strand, within Psyr_4047at 4831.032 kb on + strand, within Psyr_4047at 4831.032 kb on + strand, within Psyr_4047at 4831.032 kb on + strand, within Psyr_4047at 4831.032 kb on + strand, within Psyr_4047at 4831.032 kb on + strand, within Psyr_4047at 4831.033 kb on - strand, within Psyr_4047at 4831.033 kb on - strand, within Psyr_4047at 4831.104 kb on + strand, within Psyr_4047at 4831.104 kb on + strand, within Psyr_4047at 4831.105 kb on - strand, within Psyr_4047at 4831.140 kb on + strand, within Psyr_4047at 4831.140 kb on + strand, within Psyr_4047at 4831.146 kb on + strand, within Psyr_4047at 4831.147 kb on - strand, within Psyr_4047at 4831.228 kb on - strand, within Psyr_4047at 4831.365 kb on + strand, within Psyr_4047at 4831.365 kb on + strand, within Psyr_4047at 4831.366 kb on - strand, within Psyr_4047at 4831.410 kb on - strand, within Psyr_4047at 4831.450 kb on - strand, within Psyr_4047at 4831.603 kb on + strandat 4831.603 kb on + strandat 4831.603 kb on + strandat 4831.604 kb on - strandat 4831.624 kb on + strandat 4831.624 kb on + strandat 4831.648 kb on + strandat 4831.649 kb on - strandat 4831.682 kb on - strandat 4831.825 kb on + strandat 4831.998 kb on - strand, within Psyr_4048at 4832.105 kb on + strand, within Psyr_4048at 4832.106 kb on - strand, within Psyr_4048at 4832.106 kb on - strand, within Psyr_4048at 4832.265 kb on - strand, within Psyr_4048at 4832.265 kb on - strand, within Psyr_4048at 4832.447 kb on + strand, within Psyr_4048at 4832.447 kb on + strand, within Psyr_4048at 4832.447 kb on + strand, within Psyr_4048at 4832.447 kb on + strand, within Psyr_4048at 4832.447 kb on + strand, within Psyr_4048at 4832.448 kb on - strand, within Psyr_4048at 4832.448 kb on - strand, within Psyr_4048at 4832.448 kb on - strand, within Psyr_4048at 4832.610 kb on - strandat 4832.621 kb on + strandat 4832.676 kb on + strand, within Psyr_4049at 4832.676 kb on + strand, within Psyr_4049at 4832.882 kb on + strand, within Psyr_4049at 4832.882 kb on + strand, within Psyr_4049at 4832.883 kb on - strand, within Psyr_4049at 4832.883 kb on - strand, within Psyr_4049at 4833.228 kb on + strand, within Psyr_4049at 4833.228 kb on + strand, within Psyr_4049at 4833.228 kb on + strand, within Psyr_4049at 4833.228 kb on + strand, within Psyr_4049at 4833.228 kb on + strand, within Psyr_4049at 4833.229 kb on - strand, within Psyr_4049at 4833.229 kb on - strand, within Psyr_4049at 4833.398 kb on - strand, within Psyr_4050at 4833.532 kb on + strand, within Psyr_4050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB
remove
4,830,861 + Psyr_4047 0.34 -2.3
4,830,861 + Psyr_4047 0.34 +1.0
4,830,861 + Psyr_4047 0.34 +2.5
4,830,861 + Psyr_4047 0.34 +0.2
4,830,861 + Psyr_4047 0.34 -0.0
4,830,861 + Psyr_4047 0.34 +0.6
4,830,862 - Psyr_4047 0.34 +0.2
4,830,862 - Psyr_4047 0.34 -0.7
4,830,862 - Psyr_4047 0.34 +1.1
4,830,862 - Psyr_4047 0.34 +1.7
4,830,862 - Psyr_4047 0.34 -1.4
4,830,862 - Psyr_4047 0.34 -0.5
4,830,862 - Psyr_4047 0.34 -0.5
4,830,868 - Psyr_4047 0.35 -0.2
4,830,868 - Psyr_4047 0.35 -1.0
4,830,878 + Psyr_4047 0.36 +1.0
4,830,879 - Psyr_4047 0.36 -0.9
4,830,886 + Psyr_4047 0.36 +4.1
4,831,032 + Psyr_4047 0.49 -0.3
4,831,032 + Psyr_4047 0.49 -0.0
4,831,032 + Psyr_4047 0.49 -2.2
4,831,032 + Psyr_4047 0.49 -0.5
4,831,032 + Psyr_4047 0.49 -0.4
4,831,032 + Psyr_4047 0.49 +0.4
4,831,032 + Psyr_4047 0.49 +2.0
4,831,032 + Psyr_4047 0.49 -0.6
4,831,033 - Psyr_4047 0.50 +2.0
4,831,033 - Psyr_4047 0.50 -0.0
4,831,104 + Psyr_4047 0.56 -0.0
4,831,104 + Psyr_4047 0.56 -0.0
4,831,105 - Psyr_4047 0.56 +2.4
4,831,140 + Psyr_4047 0.59 +0.3
4,831,140 + Psyr_4047 0.59 -2.0
4,831,146 + Psyr_4047 0.60 -0.6
4,831,147 - Psyr_4047 0.60 -2.6
4,831,228 - Psyr_4047 0.67 -0.0
4,831,365 + Psyr_4047 0.79 -0.0
4,831,365 + Psyr_4047 0.79 -0.0
4,831,366 - Psyr_4047 0.80 +2.5
4,831,410 - Psyr_4047 0.84 -0.3
4,831,450 - Psyr_4047 0.87 -1.2
4,831,603 + +1.3
4,831,603 + -0.6
4,831,603 + -0.0
4,831,604 - +2.5
4,831,624 + +1.5
4,831,624 + +0.9
4,831,648 + -0.3
4,831,649 - -0.8
4,831,682 - -0.5
4,831,825 + -1.0
4,831,998 - Psyr_4048 0.23 -0.7
4,832,105 + Psyr_4048 0.37 +1.7
4,832,106 - Psyr_4048 0.37 +1.0
4,832,106 - Psyr_4048 0.37 -0.5
4,832,265 - Psyr_4048 0.58 -0.9
4,832,265 - Psyr_4048 0.58 +0.5
4,832,447 + Psyr_4048 0.82 +1.3
4,832,447 + Psyr_4048 0.82 +1.0
4,832,447 + Psyr_4048 0.82 -1.9
4,832,447 + Psyr_4048 0.82 -0.0
4,832,447 + Psyr_4048 0.82 +0.5
4,832,448 - Psyr_4048 0.82 +0.4
4,832,448 - Psyr_4048 0.82 -0.2
4,832,448 - Psyr_4048 0.82 -0.5
4,832,610 - -2.0
4,832,621 + -2.2
4,832,676 + Psyr_4049 0.12 -1.0
4,832,676 + Psyr_4049 0.12 +0.0
4,832,882 + Psyr_4049 0.38 +1.8
4,832,882 + Psyr_4049 0.38 -0.0
4,832,883 - Psyr_4049 0.38 -0.6
4,832,883 - Psyr_4049 0.38 -2.0
4,833,228 + Psyr_4049 0.81 +3.0
4,833,228 + Psyr_4049 0.81 +2.0
4,833,228 + Psyr_4049 0.81 -0.9
4,833,228 + Psyr_4049 0.81 +0.2
4,833,228 + Psyr_4049 0.81 +2.0
4,833,229 - Psyr_4049 0.82 -1.8
4,833,229 - Psyr_4049 0.82 +0.3
4,833,398 - Psyr_4050 0.11 -0.3
4,833,532 + Psyr_4050 0.33 +2.0

Or see this region's nucleotide sequence