Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_2815

Experiment: KB

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB
3,388,750	+				+0.1
3,388,824	+		Psyr_2813	0.27	-0.2
3,388,824	+		Psyr_2813	0.27	+0.6
3,388,973	+		Psyr_2813	0.81	-0.6
3,388,974	-		Psyr_2813	0.82	-2.2
3,388,977	+		Psyr_2813	0.83	+0.4
3,388,977	+		Psyr_2813	0.83	+2.0
3,388,977	+		Psyr_2813	0.83	-0.1
3,388,977	+		Psyr_2813	0.83	-0.9
3,388,977	+		Psyr_2813	0.83	+4.8
3,388,977	+		Psyr_2813	0.83	-0.1
3,388,977	+		Psyr_2813	0.83	-1.0
3,388,978	-		Psyr_2813	0.83	-1.0
3,388,978	-		Psyr_2813	0.83	+3.3
3,388,978	-		Psyr_2813	0.83	-1.0
3,388,978	-		Psyr_2813	0.83	-0.4
3,388,978	-		Psyr_2813	0.83	-0.5
3,388,978	-		Psyr_2813	0.83	-0.2
3,388,978	-		Psyr_2813	0.83	-0.5
3,388,978	-		Psyr_2813	0.83	+0.0
3,388,978	-		Psyr_2813	0.83	+0.8
3,388,978	-		Psyr_2813	0.83	+1.6
3,388,978	-		Psyr_2813	0.83	+0.4
3,388,978	-		Psyr_2813	0.83	+1.0
3,389,004	+				-0.2
3,389,004	+				+0.5
3,389,004	+				+0.2
3,389,070	-				+0.4
3,389,100	-		Psyr_2814	0.17	+0.4
3,389,289	+		Psyr_2814	0.76	+0.4
3,389,351	+				+0.4
3,389,427	+				+0.7
3,389,428	-				+0.3
3,389,431	+				+1.0
3,389,431	+				-0.1
3,389,431	+				+0.1
3,389,431	+				-0.3
3,389,431	+				-2.6
3,389,431	+				+0.0
3,389,431	+				+0.2
3,389,432	-				-0.9
3,389,432	-				-0.8
3,389,432	-				-1.6
3,389,432	-				-0.4
3,389,432	-				+0.6
3,389,432	-				+1.2
3,389,432	-				+0.5
3,389,432	-				+0.2
3,389,495	+				-1.6
3,389,495	+				+1.6
3,389,514	+				-0.2
3,389,514	+				+0.5
3,389,564	+				-1.6
3,389,565	-				-1.1
3,389,565	-				-1.2
3,389,565	-				+1.1
3,389,565	-				-0.5
3,389,565	-				+1.4
3,389,569	+				-0.1
3,389,570	-				-1.2
3,389,570	-				+0.0
3,389,631	+				+0.1
3,389,632	-				+1.4
3,389,632	-				-0.7
3,389,632	-				+0.2
3,389,672	-				+0.8
3,389,672	-				-0.5
3,389,762	+				-0.8
3,389,763	-				+2.6
3,389,765	-				-0.4
3,389,794	-		Psyr_2815	0.12	+0.2
3,389,794	-		Psyr_2815	0.12	+2.0
3,389,812	+		Psyr_2815	0.14	-3.6
3,389,812	+		Psyr_2815	0.14	+0.5
3,389,813	-		Psyr_2815	0.14	+0.2
3,389,904	-		Psyr_2815	0.23	+0.4
3,389,963	-		Psyr_2815	0.28	+0.2
3,389,975	+		Psyr_2815	0.29	-3.0
3,389,980	-		Psyr_2815	0.30	+0.4
3,389,980	-		Psyr_2815	0.30	-0.1
3,389,990	+		Psyr_2815	0.31	-0.6
3,390,030	+		Psyr_2815	0.35	-1.1
3,390,032	+		Psyr_2815	0.35	-1.9
3,390,032	+		Psyr_2815	0.35	-0.9
3,390,032	+		Psyr_2815	0.35	-1.9
3,390,032	+		Psyr_2815	0.35	-0.8
3,390,032	+		Psyr_2815	0.35	-0.6
3,390,033	-		Psyr_2815	0.35	+0.3
3,390,033	-		Psyr_2815	0.35	+0.2
3,390,036	+		Psyr_2815	0.35	+3.8
3,390,036	+		Psyr_2815	0.35	+1.6
3,390,037	-		Psyr_2815	0.35	-4.0
3,390,047	+		Psyr_2815	0.36	-1.3
3,390,151	-		Psyr_2815	0.46	+0.1
3,390,151	-		Psyr_2815	0.46	-0.9
3,390,173	-		Psyr_2815	0.49	-2.2
3,390,173	-		Psyr_2815	0.49	+0.9
3,390,214	+		Psyr_2815	0.53	+0.0
3,390,216	+		Psyr_2815	0.53	+0.1
3,390,217	-		Psyr_2815	0.53	+1.0
3,390,217	-		Psyr_2815	0.53	-1.6
3,390,306	+		Psyr_2815	0.61	-1.3
3,390,306	+		Psyr_2815	0.61	-1.3
3,390,306	+		Psyr_2815	0.61	+0.7
3,390,306	+		Psyr_2815	0.61	-0.4
3,390,307	-		Psyr_2815	0.62	-0.7
3,390,307	-		Psyr_2815	0.62	-0.2
3,390,307	-		Psyr_2815	0.62	-1.0
3,390,307	-		Psyr_2815	0.62	+0.6
3,390,307	-		Psyr_2815	0.62	+0.2
3,390,307	-		Psyr_2815	0.62	+0.3
3,390,310	+		Psyr_2815	0.62	-0.7
3,390,311	-		Psyr_2815	0.62	-4.0
3,390,325	+		Psyr_2815	0.63	+1.7
3,390,325	+		Psyr_2815	0.63	-0.5
3,390,326	-		Psyr_2815	0.63	+1.8
3,390,418	+		Psyr_2815	0.72	-0.5
3,390,419	-		Psyr_2815	0.72	-0.5
3,390,419	-		Psyr_2815	0.72	-0.2
3,390,427	-		Psyr_2815	0.73	-0.2
3,390,427	-		Psyr_2815	0.73	-2.2
3,390,431	+		Psyr_2815	0.74	-1.2
3,390,431	+		Psyr_2815	0.74	-0.6
3,390,432	-		Psyr_2815	0.74	-0.7
3,390,466	-		Psyr_2815	0.77	+0.6
3,390,483	-		Psyr_2815	0.79	-0.1
3,390,483	-		Psyr_2815	0.79	-1.3
3,390,483	-		Psyr_2815	0.79	+0.3
3,390,516	+		Psyr_2815	0.82	-0.6
3,390,516	+		Psyr_2815	0.82	-1.5
3,390,617	+				-1.2
3,390,618	-				+0.2
3,390,624	+				-1.6
3,390,625	-				-0.8
3,390,625	-				-0.1
3,390,625	-				-0.2
3,390,656	+				-0.6
3,390,677	+				-3.0
3,390,678	-				+0.8
3,390,680	+				-1.2
3,390,681	-				+1.4
3,390,681	-				+2.0
3,390,681	-				+1.4
3,390,709	+				+3.5
3,390,807	+				-1.8
3,390,878	+				-1.1
3,390,878	+				+0.8
3,390,878	+				+1.1
3,390,878	+				-0.6
3,390,879	-				-0.1
3,390,919	+				+0.7
3,390,920	-				+1.5
3,391,037	+				-0.3
3,391,038	-				+0.8
3,391,111	+				+2.0
3,391,111	+				+3.3
3,391,111	+				+1.0
3,391,127	+				-2.0
3,391,127	+				+0.6
3,391,128	-				-0.4
3,391,128	-				-1.8
3,391,128	-				-2.0
3,391,171	+				-1.2
3,391,172	-				-1.7
3,391,172	-				-1.5
3,391,245	+				+2.0
3,391,457	+				-0.1
3,391,555	+				+0.1