Strain Fitness in Pseudomonas syringae pv. syringae B728a ΔmexB around Psyr_0675

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_0674 and Psyr_0675 are separated by 32 nucleotidesPsyr_0675 and Psyr_0676 are separated by 94 nucleotides Psyr_0674: Psyr_0674 - Protein of unknown function UPF0029, at 764,573 to 765,166 _0674 Psyr_0675: Psyr_0675 - transcriptional regulator, TetR family, at 765,199 to 765,861 _0675 Psyr_0676: Psyr_0676 - Xanthine/uracil permease family, at 765,956 to 767,353 _0676 Position (kb) 765 766Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 764.257 kb on - strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.332 kb on + strandat 764.333 kb on - strandat 764.333 kb on - strandat 764.333 kb on - strandat 764.376 kb on - strandat 764.392 kb on - strandat 764.424 kb on + strandat 764.513 kb on - strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.533 kb on + strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.534 kb on - strandat 764.550 kb on + strandat 764.550 kb on + strandat 764.550 kb on + strandat 764.550 kb on + strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.551 kb on - strandat 764.844 kb on + strand, within Psyr_0674at 764.844 kb on + strand, within Psyr_0674at 764.844 kb on + strand, within Psyr_0674at 764.845 kb on - strand, within Psyr_0674at 765.200 kb on + strandat 765.200 kb on + strandat 765.200 kb on + strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.201 kb on - strandat 765.333 kb on - strand, within Psyr_0675at 765.464 kb on + strand, within Psyr_0675at 765.464 kb on + strand, within Psyr_0675at 765.558 kb on + strand, within Psyr_0675at 765.559 kb on - strand, within Psyr_0675at 765.560 kb on + strand, within Psyr_0675at 765.561 kb on - strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.653 kb on + strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.654 kb on - strand, within Psyr_0675at 765.666 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.677 kb on + strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.678 kb on - strand, within Psyr_0675at 765.680 kb on + strand, within Psyr_0675at 765.680 kb on + strand, within Psyr_0675at 765.680 kb on + strand, within Psyr_0675at 765.681 kb on - strand, within Psyr_0675at 765.681 kb on - strand, within Psyr_0675at 765.681 kb on - strand, within Psyr_0675at 765.681 kb on - strand, within Psyr_0675at 765.681 kb on - strand, within Psyr_0675at 765.681 kb on - strand, within Psyr_0675at 765.681 kb on - strand, within Psyr_0675at 765.904 kb on + strandat 765.905 kb on - strandat 765.957 kb on + strandat 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.341 kb on + strand, within Psyr_0676at 766.342 kb on - strand, within Psyr_0676at 766.342 kb on - strand, within Psyr_0676at 766.569 kb on + strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676at 766.570 kb on - strand, within Psyr_0676

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Per-strain Table

Position Strand Gene LocusTag Fraction KB
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764,257 - +0.1
764,332 + +0.8
764,332 + +2.7
764,332 + +0.6
764,332 + +1.1
764,333 - +1.1
764,333 - +0.4
764,333 - -0.0
764,376 - +0.6
764,392 - +4.3
764,424 + -0.5
764,513 - -1.7
764,533 + -0.3
764,533 + +0.2
764,533 + -0.7
764,533 + +2.1
764,533 + -1.5
764,533 + +0.6
764,533 + -0.8
764,533 + -0.4
764,533 + -0.8
764,533 + +0.1
764,533 + +0.7
764,533 + -0.3
764,534 - -1.1
764,534 - -0.1
764,534 - -1.4
764,534 - -1.0
764,534 - -0.4
764,550 + +0.7
764,550 + -2.0
764,550 + -1.4
764,550 + +2.1
764,551 - -1.0
764,551 - -0.9
764,551 - -2.0
764,844 + Psyr_0674 0.46 +0.9
764,844 + Psyr_0674 0.46 +0.0
764,844 + Psyr_0674 0.46 -1.1
764,845 - Psyr_0674 0.46 -1.6
765,200 + -0.3
765,200 + -0.2
765,200 + +0.2
765,201 - -1.9
765,201 - -1.8
765,201 - -0.9
765,333 - Psyr_0675 0.20 -1.9
765,464 + Psyr_0675 0.40 +3.4
765,464 + Psyr_0675 0.40 +0.3
765,558 + Psyr_0675 0.54 +0.6
765,559 - Psyr_0675 0.54 -1.0
765,560 + Psyr_0675 0.54 -0.7
765,561 - Psyr_0675 0.55 +0.5
765,653 + Psyr_0675 0.68 +0.2
765,653 + Psyr_0675 0.68 +0.0
765,653 + Psyr_0675 0.68 +0.9
765,653 + Psyr_0675 0.68 -0.1
765,653 + Psyr_0675 0.68 -0.3
765,653 + Psyr_0675 0.68 -0.4
765,653 + Psyr_0675 0.68 -1.7
765,653 + Psyr_0675 0.68 +0.6
765,653 + Psyr_0675 0.68 +1.5
765,653 + Psyr_0675 0.68 +1.7
765,653 + Psyr_0675 0.68 -1.3
765,654 - Psyr_0675 0.69 -2.1
765,654 - Psyr_0675 0.69 -0.5
765,654 - Psyr_0675 0.69 +0.7
765,654 - Psyr_0675 0.69 -2.8
765,654 - Psyr_0675 0.69 +1.0
765,654 - Psyr_0675 0.69 -1.0
765,654 - Psyr_0675 0.69 -0.6
765,654 - Psyr_0675 0.69 +1.0
765,654 - Psyr_0675 0.69 -1.4
765,654 - Psyr_0675 0.69 -0.2
765,666 + Psyr_0675 0.70 -0.2
765,677 + Psyr_0675 0.72 +0.5
765,677 + Psyr_0675 0.72 +0.1
765,677 + Psyr_0675 0.72 -1.1
765,677 + Psyr_0675 0.72 +1.3
765,677 + Psyr_0675 0.72 -0.3
765,678 - Psyr_0675 0.72 +4.6
765,678 - Psyr_0675 0.72 -0.8
765,678 - Psyr_0675 0.72 +1.3
765,678 - Psyr_0675 0.72 -0.0
765,678 - Psyr_0675 0.72 +1.9
765,678 - Psyr_0675 0.72 +0.7
765,680 + Psyr_0675 0.73 +0.9
765,680 + Psyr_0675 0.73 +1.0
765,680 + Psyr_0675 0.73 -0.4
765,681 - Psyr_0675 0.73 +0.3
765,681 - Psyr_0675 0.73 +2.3
765,681 - Psyr_0675 0.73 +0.3
765,681 - Psyr_0675 0.73 -0.3
765,681 - Psyr_0675 0.73 +1.5
765,681 - Psyr_0675 0.73 -0.2
765,681 - Psyr_0675 0.73 +1.6
765,904 + -1.0
765,905 - +1.6
765,957 + -0.8
766,341 + Psyr_0676 0.28 +0.3
766,341 + Psyr_0676 0.28 +0.4
766,341 + Psyr_0676 0.28 +0.3
766,341 + Psyr_0676 0.28 -0.2
766,342 - Psyr_0676 0.28 -0.6
766,342 - Psyr_0676 0.28 -1.1
766,569 + Psyr_0676 0.44 -2.4
766,570 - Psyr_0676 0.44 -1.9
766,570 - Psyr_0676 0.44 -1.1

Or see this region's nucleotide sequence