Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0556 and Psyr_0557 are separated by 88 nucleotides Psyr_0557 and Psyr_0558 are separated by 65 nucleotides
Psyr_0556: Psyr_0556 - Histidine kinase, HAMP region, at 629,377 to 630,918
_0556
Psyr_0557: Psyr_0557 - phosphoserine phosphatase, at 631,007 to 632,263
_0557
Psyr_0558: Psyr_0558 - conserved hypothetical protein, at 632,329 to 634,113
_0558
Position (kb) 631
632
633 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 631.015 kb on - strand at 631.015 kb on - strand at 631.069 kb on + strand at 631.070 kb on - strand at 631.070 kb on - strand at 631.256 kb on + strand, within Psyr_0557 at 631.348 kb on + strand, within Psyr_0557 at 631.423 kb on + strand, within Psyr_0557 at 631.718 kb on - strand, within Psyr_0557 at 631.792 kb on - strand, within Psyr_0557 at 631.880 kb on + strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.913 kb on + strand, within Psyr_0557 at 631.914 kb on - strand, within Psyr_0557 at 631.914 kb on - strand, within Psyr_0557 at 631.914 kb on - strand, within Psyr_0557 at 631.914 kb on - strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 631.952 kb on + strand, within Psyr_0557 at 632.148 kb on + strand at 632.149 kb on - strand at 632.225 kb on + strand at 632.225 kb on + strand at 632.226 kb on - strand at 632.226 kb on - strand at 632.226 kb on - strand at 632.226 kb on - strand at 632.405 kb on + strand at 632.405 kb on + strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.406 kb on - strand at 632.415 kb on - strand at 632.429 kb on + strand at 632.429 kb on + strand at 632.430 kb on - strand at 632.430 kb on - strand at 633.074 kb on + strand, within Psyr_0558 at 633.074 kb on + strand, within Psyr_0558 at 633.075 kb on - strand, within Psyr_0558 at 633.075 kb on - strand, within Psyr_0558 at 633.129 kb on + strand, within Psyr_0558 at 633.129 kb on + strand, within Psyr_0558 at 633.130 kb on - strand, within Psyr_0558 at 633.130 kb on - strand, within Psyr_0558 at 633.255 kb on - strand, within Psyr_0558 at 633.255 kb on - strand, within Psyr_0558
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 631,015 - +2.5 631,015 - +1.0 631,069 + -2.7 631,070 - -1.2 631,070 - -1.5 631,256 + Psyr_0557 0.20 +0.7 631,348 + Psyr_0557 0.27 +1.3 631,423 + Psyr_0557 0.33 +0.4 631,718 - Psyr_0557 0.57 +0.6 631,792 - Psyr_0557 0.62 -0.8 631,880 + Psyr_0557 0.69 +0.2 631,913 + Psyr_0557 0.72 -0.5 631,913 + Psyr_0557 0.72 -2.0 631,913 + Psyr_0557 0.72 +0.3 631,914 - Psyr_0557 0.72 +3.7 631,914 - Psyr_0557 0.72 +1.4 631,914 - Psyr_0557 0.72 -0.4 631,914 - Psyr_0557 0.72 +0.4 631,952 + Psyr_0557 0.75 +1.9 631,952 + Psyr_0557 0.75 +1.4 631,952 + Psyr_0557 0.75 +0.1 631,952 + Psyr_0557 0.75 +0.5 631,952 + Psyr_0557 0.75 -3.7 631,952 + Psyr_0557 0.75 -0.6 631,952 + Psyr_0557 0.75 +1.8 632,148 + -0.3 632,149 - -0.8 632,225 + +0.2 632,225 + -0.3 632,226 - -1.0 632,226 - +1.8 632,226 - -1.5 632,226 - -0.0 632,405 + -0.5 632,405 + +0.1 632,406 - +0.7 632,406 - -1.0 632,406 - -0.5 632,406 - +2.3 632,406 - -0.9 632,406 - -0.2 632,406 - +2.1 632,415 - -0.0 632,429 + +1.8 632,429 + -0.6 632,430 - -0.3 632,430 - -0.1 633,074 + Psyr_0558 0.42 -1.1 633,074 + Psyr_0558 0.42 -0.0 633,075 - Psyr_0558 0.42 -1.4 633,075 - Psyr_0558 0.42 -2.1 633,129 + Psyr_0558 0.45 -0.7 633,129 + Psyr_0558 0.45 +0.2 633,130 - Psyr_0558 0.45 +0.2 633,130 - Psyr_0558 0.45 +1.7 633,255 - Psyr_0558 0.52 -0.3 633,255 - Psyr_0558 0.52 +2.0
Or see this region's nucleotide sequence