Experiment: KB
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0382 and Psyr_0383 overlap by 4 nucleotides Psyr_0383 and Psyr_0384 are separated by 4 nucleotides Psyr_0384 and Psyr_0385 are separated by 44 nucleotides Psyr_0385 and Psyr_0386 are separated by 2 nucleotides Psyr_0386 and Psyr_0387 are separated by 67 nucleotides
Psyr_0382: Psyr_0382 - Sec-independent periplasmic protein translocase, at 412,955 to 413,755
_0382
Psyr_0383: Psyr_0383 - Twin-arginine translocation protein TatB, at 413,752 to 414,228
_0383
Psyr_0384: Psyr_0384 - Twin-arginine translocation protein TatA/E, at 414,233 to 414,508
_0384
Psyr_0385: Psyr_0385 - phosphoribosyl-ATP pyrophosphatase, at 414,553 to 414,885
_0385
Psyr_0386: Psyr_0386 - phosphoribosyl-AMP cyclohydrolase, at 414,888 to 415,280
_0386
Psyr_0387: Psyr_0387 - 2-octaprenylphenol hydroxylase, at 415,348 to 416,967
_0387
Position (kb) 414
415 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 413.386 kb on - strand, within Psyr_0382 at 413.386 kb on - strand, within Psyr_0382 at 413.587 kb on - strand, within Psyr_0382 at 413.617 kb on - strand, within Psyr_0382 at 413.617 kb on - strand, within Psyr_0382 at 414.028 kb on - strand, within Psyr_0383 at 414.128 kb on - strand, within Psyr_0383 at 414.462 kb on - strand, within Psyr_0384 at 414.462 kb on - strand, within Psyr_0384 at 414.523 kb on - strand at 414.523 kb on - strand at 414.555 kb on - strand at 414.693 kb on - strand, within Psyr_0385 at 414.693 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.816 kb on - strand, within Psyr_0385 at 414.877 kb on - strand at 414.877 kb on - strand at 414.905 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.909 kb on - strand at 414.937 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 414.962 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.133 kb on - strand, within Psyr_0386 at 415.280 kb on + strand at 415.281 kb on - strand at 415.281 kb on - strand at 415.281 kb on - strand at 415.285 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction KB remove 413,386 - Psyr_0382 0.54 -2.7 413,386 - Psyr_0382 0.54 +1.2 413,587 - Psyr_0382 0.79 +1.2 413,617 - Psyr_0382 0.83 +0.6 413,617 - Psyr_0382 0.83 +1.2 414,028 - Psyr_0383 0.58 -0.8 414,128 - Psyr_0383 0.79 +0.2 414,462 - Psyr_0384 0.83 +2.2 414,462 - Psyr_0384 0.83 +3.2 414,523 - -0.6 414,523 - +1.2 414,555 - +1.2 414,693 - Psyr_0385 0.42 +3.5 414,693 - Psyr_0385 0.42 +0.2 414,816 - Psyr_0385 0.79 -3.0 414,816 - Psyr_0385 0.79 +0.2 414,816 - Psyr_0385 0.79 -3.5 414,816 - Psyr_0385 0.79 -1.3 414,877 - -0.2 414,877 - -2.2 414,905 - +0.9 414,909 - +0.3 414,909 - -0.6 414,909 - -0.1 414,909 - -0.5 414,909 - +0.2 414,909 - +1.2 414,909 - -0.8 414,909 - +4.5 414,909 - +1.2 414,937 - Psyr_0386 0.12 -0.5 414,962 - Psyr_0386 0.19 -1.3 414,962 - Psyr_0386 0.19 -0.4 414,962 - Psyr_0386 0.19 +2.2 414,962 - Psyr_0386 0.19 +1.7 414,962 - Psyr_0386 0.19 +1.2 415,133 - Psyr_0386 0.62 -1.2 415,133 - Psyr_0386 0.62 +0.6 415,133 - Psyr_0386 0.62 -2.3 415,133 - Psyr_0386 0.62 -0.4 415,133 - Psyr_0386 0.62 -1.6 415,133 - Psyr_0386 0.62 -1.3 415,133 - Psyr_0386 0.62 -1.2 415,133 - Psyr_0386 0.62 -1.9 415,133 - Psyr_0386 0.62 +1.2 415,280 + -2.3 415,281 - -0.8 415,281 - +1.4 415,281 - +0.6 415,285 - +2.3
Or see this region's nucleotide sequence