Experiment: Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_03015 and PS417_03020 are separated by 99 nucleotides PS417_03020 and PS417_03025 are separated by 251 nucleotides PS417_03025 and PS417_03030 are separated by 151 nucleotides PS417_03030 and PS417_03035 overlap by 8 nucleotides
PS417_03015: PS417_03015 - hypothetical protein, at 690,357 to 695,255
_03015
PS417_03020: PS417_03020 - MFS transporter, at 695,355 to 695,648
_03020
PS417_03025: PS417_03025 - penicillin-binding protein 1C, at 695,900 to 698,191
_03025
PS417_03030: PS417_03030 - pyrophosphatase, at 698,343 to 698,651
_03030
PS417_03035: PS417_03035 - SAM-dependent methyltransferase, at 698,644 to 699,393
_03035
Position (kb) 695
696
697
698
699 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 695.083 kb on - strand at 695.083 kb on - strand at 695.083 kb on - strand at 695.257 kb on - strand at 695.279 kb on - strand at 695.335 kb on - strand at 695.335 kb on - strand at 695.335 kb on - strand at 695.346 kb on - strand at 695.346 kb on - strand at 695.588 kb on + strand, within PS417_03020 at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.648 kb on + strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.649 kb on - strand at 695.708 kb on + strand at 695.708 kb on + strand at 695.708 kb on + strand at 695.752 kb on + strand at 695.817 kb on + strand at 695.877 kb on + strand at 695.878 kb on - strand at 696.072 kb on - strand at 696.072 kb on - strand at 696.075 kb on - strand at 696.095 kb on + strand at 696.095 kb on + strand at 696.096 kb on - strand at 696.113 kb on + strand at 696.327 kb on - strand, within PS417_03025 at 696.742 kb on + strand, within PS417_03025 at 696.743 kb on - strand, within PS417_03025 at 696.743 kb on - strand, within PS417_03025 at 696.743 kb on - strand at 696.840 kb on + strand, within PS417_03025 at 696.840 kb on + strand, within PS417_03025 at 696.840 kb on + strand, within PS417_03025 at 696.840 kb on + strand, within PS417_03025 at 696.840 kb on + strand, within PS417_03025 at 696.840 kb on + strand, within PS417_03025 at 696.841 kb on - strand, within PS417_03025 at 696.841 kb on - strand, within PS417_03025 at 696.841 kb on - strand, within PS417_03025 at 696.841 kb on - strand, within PS417_03025 at 697.202 kb on + strand, within PS417_03025 at 697.279 kb on - strand, within PS417_03025 at 698.394 kb on - strand, within PS417_03030 at 698.556 kb on + strand, within PS417_03030 at 698.556 kb on + strand, within PS417_03030 at 698.556 kb on + strand, within PS417_03030 at 698.557 kb on - strand, within PS417_03030 at 698.805 kb on + strand, within PS417_03035 at 698.805 kb on + strand, within PS417_03035 at 698.805 kb on + strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.806 kb on - strand, within PS417_03035 at 698.919 kb on + strand, within PS417_03035 at 698.920 kb on - strand, within PS417_03035 at 698.965 kb on + strand, within PS417_03035 at 699.168 kb on + strand, within PS417_03035 at 699.169 kb on - strand, within PS417_03035
Per-strain Table
Position Strand Gene LocusTag Fraction Fungal_growth_media_mCAFEs_v1_noCarbon with Supernatant; Trichoderma harzianum T22 grown in Fungal_growth_media_mCAFEs_v1, filtered and pH-adjusted 1x remove 695,083 - -0.5 695,083 - -0.3 695,083 - -0.6 695,257 - -0.2 695,279 - +0.2 695,335 - +0.2 695,335 - -0.8 695,335 - -0.7 695,346 - +1.3 695,346 - +1.5 695,588 + PS417_03020 0.79 +1.3 695,648 + -0.2 695,648 + -0.3 695,648 + +0.2 695,648 + -0.1 695,648 + +0.3 695,648 + -0.1 695,648 + +0.3 695,648 + -0.5 695,648 + -0.9 695,648 + -0.2 695,649 - -0.4 695,649 - +0.2 695,649 - +0.3 695,649 - +0.8 695,649 - -0.0 695,649 - -0.1 695,649 - -0.3 695,649 - +0.7 695,708 + +0.9 695,708 + -0.3 695,708 + -0.0 695,752 + +0.5 695,817 + -1.3 695,877 + -0.8 695,878 - +0.1 696,072 - -0.6 696,072 - +0.1 696,075 - -2.6 696,095 + -1.2 696,095 + -0.6 696,096 - +0.1 696,113 + -3.1 696,327 - PS417_03025 0.19 -0.4 696,742 + PS417_03025 0.37 -0.4 696,743 - PS417_03025 0.37 -1.6 696,743 - PS417_03025 0.37 +0.0 696,743 - -0.5 696,840 + PS417_03025 0.41 -1.2 696,840 + PS417_03025 0.41 -0.8 696,840 + PS417_03025 0.41 -0.2 696,840 + PS417_03025 0.41 -0.2 696,840 + PS417_03025 0.41 -0.5 696,840 + PS417_03025 0.41 +1.5 696,841 - PS417_03025 0.41 -0.7 696,841 - PS417_03025 0.41 -0.4 696,841 - PS417_03025 0.41 -0.7 696,841 - PS417_03025 0.41 -1.4 697,202 + PS417_03025 0.57 -0.1 697,279 - PS417_03025 0.60 -1.5 698,394 - PS417_03030 0.17 -0.1 698,556 + PS417_03030 0.69 -0.8 698,556 + PS417_03030 0.69 -0.5 698,556 + PS417_03030 0.69 -0.3 698,557 - PS417_03030 0.69 -0.2 698,805 + PS417_03035 0.21 -0.5 698,805 + PS417_03035 0.21 -0.8 698,805 + PS417_03035 0.21 -0.7 698,806 - PS417_03035 0.22 +1.1 698,806 - PS417_03035 0.22 +2.1 698,806 - PS417_03035 0.22 -0.1 698,806 - PS417_03035 0.22 -0.7 698,806 - PS417_03035 0.22 +1.0 698,806 - PS417_03035 0.22 +0.4 698,919 + PS417_03035 0.37 +0.0 698,920 - PS417_03035 0.37 -0.7 698,965 + PS417_03035 0.43 -0.5 699,168 + PS417_03035 0.70 -0.8 699,169 - PS417_03035 0.70 -1.1
Or see this region's nucleotide sequence