Experiment: RCH2_defined_glucose with MS_media 1x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_00750 and PS417_00755 are separated by 2 nucleotides PS417_00755 and PS417_00760 are separated by 367 nucleotides PS417_00760 and PS417_00765 are separated by 31 nucleotides
PS417_00750: PS417_00750 - N-glycosyltransferase, at 159,282 to 160,622
_00750
PS417_00755: PS417_00755 - biofilm PGA synthesis protein PgaD, at 160,625 to 161,107
_00755
PS417_00760: PS417_00760 - ShlB family hemolysin secretion/activation protein, at 161,475 to 163,196
_00760
PS417_00765: PS417_00765 - filamentous hemagglutinin, at 163,228 to 170,496
_00765
Position (kb) 161
162
163
164 Strain fitness (log2 ratio) -2
-1
0
1
2 at 160.651 kb on + strand at 160.651 kb on + strand at 160.651 kb on + strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.652 kb on - strand at 160.805 kb on + strand, within PS417_00755 at 161.106 kb on - strand at 161.157 kb on + strand at 161.221 kb on + strand at 161.222 kb on - strand at 161.261 kb on - strand at 161.344 kb on - strand at 161.344 kb on - strand at 161.434 kb on + strand at 161.779 kb on - strand, within PS417_00760 at 161.779 kb on - strand, within PS417_00760 at 161.874 kb on + strand, within PS417_00760 at 161.874 kb on + strand, within PS417_00760 at 162.262 kb on + strand, within PS417_00760 at 162.324 kb on + strand, within PS417_00760 at 162.325 kb on - strand, within PS417_00760 at 162.327 kb on + strand, within PS417_00760 at 162.327 kb on + strand, within PS417_00760 at 162.360 kb on + strand, within PS417_00760 at 162.366 kb on + strand, within PS417_00760 at 162.366 kb on + strand at 162.367 kb on - strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.390 kb on + strand, within PS417_00760 at 162.391 kb on - strand, within PS417_00760 at 162.391 kb on - strand, within PS417_00760 at 162.391 kb on - strand, within PS417_00760 at 162.524 kb on + strand, within PS417_00760 at 162.524 kb on + strand, within PS417_00760 at 162.525 kb on - strand, within PS417_00760 at 162.525 kb on - strand, within PS417_00760 at 162.525 kb on - strand, within PS417_00760 at 162.527 kb on + strand, within PS417_00760 at 162.527 kb on + strand, within PS417_00760 at 162.527 kb on + strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.528 kb on - strand, within PS417_00760 at 162.531 kb on + strand, within PS417_00760 at 162.531 kb on + strand, within PS417_00760 at 162.531 kb on + strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.532 kb on - strand, within PS417_00760 at 162.548 kb on + strand, within PS417_00760 at 162.732 kb on + strand, within PS417_00760 at 162.733 kb on - strand, within PS417_00760 at 162.750 kb on + strand, within PS417_00760 at 162.751 kb on - strand, within PS417_00760 at 163.033 kb on - strand at 163.034 kb on + strand at 163.170 kb on + strand at 163.171 kb on - strand at 163.194 kb on + strand at 163.328 kb on + strand at 163.329 kb on - strand at 163.489 kb on + strand at 163.561 kb on + strand at 163.561 kb on + strand at 163.562 kb on - strand at 163.564 kb on - strand at 163.799 kb on - strand at 164.034 kb on + strand, within PS417_00765 at 164.034 kb on + strand, within PS417_00765 at 164.038 kb on + strand, within PS417_00765 at 164.038 kb on + strand, within PS417_00765 at 164.038 kb on + strand, within PS417_00765 at 164.039 kb on - strand, within PS417_00765 at 164.039 kb on - strand, within PS417_00765
Per-strain Table
Position Strand Gene LocusTag Fraction RCH2_defined_glucose with MS_media 1x remove 160,651 + +2.2 160,651 + -0.4 160,651 + +1.2 160,652 - -0.2 160,652 - -0.3 160,652 - -0.6 160,805 + PS417_00755 0.37 -0.3 161,106 - +0.1 161,157 + -0.1 161,221 + +1.2 161,222 - +0.2 161,261 - +0.7 161,344 - -1.5 161,344 - -0.4 161,434 + +0.2 161,779 - PS417_00760 0.18 -2.7 161,779 - PS417_00760 0.18 -0.3 161,874 + PS417_00760 0.23 -0.9 161,874 + PS417_00760 0.23 -0.9 162,262 + PS417_00760 0.46 -1.1 162,324 + PS417_00760 0.49 -0.2 162,325 - PS417_00760 0.49 -0.2 162,327 + PS417_00760 0.49 -0.8 162,327 + PS417_00760 0.49 +0.2 162,360 + PS417_00760 0.51 -0.8 162,366 + PS417_00760 0.52 -0.8 162,366 + +0.7 162,367 - PS417_00760 0.52 +0.4 162,390 + PS417_00760 0.53 -0.1 162,390 + PS417_00760 0.53 +0.0 162,390 + PS417_00760 0.53 -1.3 162,390 + PS417_00760 0.53 -0.2 162,390 + PS417_00760 0.53 -0.1 162,391 - PS417_00760 0.53 -0.5 162,391 - PS417_00760 0.53 -1.5 162,391 - PS417_00760 0.53 -0.5 162,524 + PS417_00760 0.61 +0.1 162,524 + PS417_00760 0.61 +0.6 162,525 - PS417_00760 0.61 -0.9 162,525 - PS417_00760 0.61 -0.2 162,525 - PS417_00760 0.61 +0.7 162,527 + PS417_00760 0.61 -1.3 162,527 + PS417_00760 0.61 -0.4 162,527 + PS417_00760 0.61 +0.4 162,528 - PS417_00760 0.61 +2.7 162,528 - PS417_00760 0.61 -1.3 162,528 - PS417_00760 0.61 +0.3 162,528 - PS417_00760 0.61 -0.3 162,528 - PS417_00760 0.61 -2.5 162,531 + PS417_00760 0.61 +1.3 162,531 + PS417_00760 0.61 -0.6 162,531 + PS417_00760 0.61 -2.3 162,532 - PS417_00760 0.61 -0.9 162,532 - PS417_00760 0.61 -0.3 162,532 - PS417_00760 0.61 +0.2 162,532 - PS417_00760 0.61 -0.5 162,532 - PS417_00760 0.61 -0.2 162,532 - PS417_00760 0.61 -0.7 162,548 + PS417_00760 0.62 -1.3 162,732 + PS417_00760 0.73 -0.7 162,733 - PS417_00760 0.73 -1.1 162,750 + PS417_00760 0.74 +0.3 162,751 - PS417_00760 0.74 -0.2 163,033 - -1.0 163,034 + -0.2 163,170 + -1.4 163,171 - +0.7 163,194 + +0.0 163,328 + -0.0 163,329 - +1.7 163,489 + +1.0 163,561 + -0.5 163,561 + -0.3 163,562 - +1.7 163,564 - +0.2 163,799 - -0.5 164,034 + PS417_00765 0.11 -0.9 164,034 + PS417_00765 0.11 +0.0 164,038 + PS417_00765 0.11 -0.8 164,038 + PS417_00765 0.11 -0.1 164,038 + PS417_00765 0.11 -0.3 164,039 - PS417_00765 0.11 +0.9 164,039 - PS417_00765 0.11 +0.0
Or see this region's nucleotide sequence