Experiment: D-Trehalose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu3424 and Atu3425 are separated by 51 nucleotides Atu3425 and Atu3426 are separated by 154 nucleotides Atu3426 and Atu3427 are separated by 129 nucleotides Atu3427 and Atu3428 are separated by 52 nucleotides
Atu3424: Atu3424 - hypothetical protein, at 471,105 to 472,049
Atu3424
Atu3425: Atu3425 - hypothetical protein, at 472,101 to 472,646
Atu3425
Atu3426: Atu3426 - sulfonate monooxygenase, at 472,801 to 473,970
Atu3426
Atu3427: Atu3427 - hypothetical protein, at 474,100 to 474,417
Atu3427
Atu3428: Atu3428 - hypothetical protein, at 474,470 to 475,087
Atu3428
Position (kb) 472
473
474 Strain fitness (log2 ratio) -1
0
1 at 471.815 kb on - strand, within Atu3424 at 471.842 kb on + strand, within Atu3424 at 471.864 kb on + strand, within Atu3424 at 471.867 kb on - strand, within Atu3424 at 472.165 kb on + strand, within Atu3425 at 472.260 kb on - strand, within Atu3425 at 472.275 kb on - strand, within Atu3425 at 472.403 kb on - strand, within Atu3425 at 472.414 kb on + strand, within Atu3425 at 472.425 kb on + strand, within Atu3425 at 472.497 kb on + strand, within Atu3425 at 472.523 kb on + strand, within Atu3425 at 472.655 kb on + strand at 472.681 kb on - strand at 472.932 kb on + strand, within Atu3426 at 473.005 kb on + strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.008 kb on - strand, within Atu3426 at 473.045 kb on + strand, within Atu3426 at 473.061 kb on + strand, within Atu3426 at 473.061 kb on + strand, within Atu3426 at 473.078 kb on + strand, within Atu3426 at 473.085 kb on + strand, within Atu3426 at 473.085 kb on + strand, within Atu3426 at 473.087 kb on - strand, within Atu3426 at 473.089 kb on + strand, within Atu3426 at 473.093 kb on - strand, within Atu3426 at 473.234 kb on + strand, within Atu3426 at 473.241 kb on - strand, within Atu3426 at 473.241 kb on - strand, within Atu3426 at 473.272 kb on - strand, within Atu3426 at 473.276 kb on - strand, within Atu3426 at 473.282 kb on - strand, within Atu3426 at 473.363 kb on + strand, within Atu3426 at 473.368 kb on + strand, within Atu3426 at 473.368 kb on + strand, within Atu3426 at 473.494 kb on - strand, within Atu3426 at 473.594 kb on - strand, within Atu3426 at 473.680 kb on + strand, within Atu3426 at 473.688 kb on - strand, within Atu3426 at 473.688 kb on - strand, within Atu3426 at 473.688 kb on - strand, within Atu3426 at 473.753 kb on - strand, within Atu3426 at 473.757 kb on + strand, within Atu3426 at 473.834 kb on - strand, within Atu3426 at 473.834 kb on - strand, within Atu3426 at 474.015 kb on + strand at 474.131 kb on + strand at 474.132 kb on - strand, within Atu3427 at 474.139 kb on + strand, within Atu3427 at 474.290 kb on - strand, within Atu3427 at 474.305 kb on - strand, within Atu3427 at 474.352 kb on + strand, within Atu3427 at 474.443 kb on + strand at 474.489 kb on + strand at 474.537 kb on - strand, within Atu3428 at 474.572 kb on + strand, within Atu3428 at 474.628 kb on + strand, within Atu3428 at 474.724 kb on + strand, within Atu3428 at 474.777 kb on + strand, within Atu3428 at 474.792 kb on + strand, within Atu3428 at 474.816 kb on + strand, within Atu3428 at 474.834 kb on + strand, within Atu3428 at 474.880 kb on - strand, within Atu3428 at 474.946 kb on + strand, within Atu3428
Per-strain Table
Position Strand Gene LocusTag Fraction D-Trehalose (C) remove 471,815 - Atu3424 0.75 -0.0 471,842 + Atu3424 0.78 -1.0 471,864 + Atu3424 0.80 +0.2 471,867 - Atu3424 0.81 +0.1 472,165 + Atu3425 0.12 -0.1 472,260 - Atu3425 0.29 -0.3 472,275 - Atu3425 0.32 -0.3 472,403 - Atu3425 0.55 +0.0 472,414 + Atu3425 0.57 -0.7 472,425 + Atu3425 0.59 -0.2 472,497 + Atu3425 0.73 -0.0 472,523 + Atu3425 0.77 -0.3 472,655 + +0.1 472,681 - -0.2 472,932 + Atu3426 0.11 -1.6 473,005 + Atu3426 0.17 -0.5 473,008 - Atu3426 0.18 -1.7 473,008 - Atu3426 0.18 -0.7 473,008 - Atu3426 0.18 +0.6 473,045 + Atu3426 0.21 -0.8 473,061 + Atu3426 0.22 -0.7 473,061 + Atu3426 0.22 +0.0 473,078 + Atu3426 0.24 -0.6 473,085 + Atu3426 0.24 +0.1 473,085 + Atu3426 0.24 -0.8 473,087 - Atu3426 0.24 +0.4 473,089 + Atu3426 0.25 +0.5 473,093 - Atu3426 0.25 -0.3 473,234 + Atu3426 0.37 -1.3 473,241 - Atu3426 0.38 -0.1 473,241 - Atu3426 0.38 +0.3 473,272 - Atu3426 0.40 -0.9 473,276 - Atu3426 0.41 -0.4 473,282 - Atu3426 0.41 -0.3 473,363 + Atu3426 0.48 -0.5 473,368 + Atu3426 0.48 -0.5 473,368 + Atu3426 0.48 -0.9 473,494 - Atu3426 0.59 -1.2 473,594 - Atu3426 0.68 -0.4 473,680 + Atu3426 0.75 -0.8 473,688 - Atu3426 0.76 +0.6 473,688 - Atu3426 0.76 +0.4 473,688 - Atu3426 0.76 -0.5 473,753 - Atu3426 0.81 -0.7 473,757 + Atu3426 0.82 -0.5 473,834 - Atu3426 0.88 -0.2 473,834 - Atu3426 0.88 -1.0 474,015 + -0.4 474,131 + +0.4 474,132 - Atu3427 0.10 -0.1 474,139 + Atu3427 0.12 +0.5 474,290 - Atu3427 0.60 +0.3 474,305 - Atu3427 0.64 +0.3 474,352 + Atu3427 0.79 +0.4 474,443 + +0.6 474,489 + +0.6 474,537 - Atu3428 0.11 +0.4 474,572 + Atu3428 0.17 +0.5 474,628 + Atu3428 0.26 -0.7 474,724 + Atu3428 0.41 -0.1 474,777 + Atu3428 0.50 -0.0 474,792 + Atu3428 0.52 -0.1 474,816 + Atu3428 0.56 +0.3 474,834 + Atu3428 0.59 +0.2 474,880 - Atu3428 0.66 +0.0 474,946 + Atu3428 0.77 +0.4
Or see this region's nucleotide sequence