Experiment: Beta-Lactose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu5462 and Atu5463 overlap by 4 nucleotides Atu5463 and Atu5464 overlap by 4 nucleotides
Atu5462: Atu5462 - ABC transporter nucleotide binding/ATPase, at 454,632 to 455,714
Atu5462
Atu5463: Atu5463 - putative UDP-glucose 4-epimerase, at 455,711 to 456,694
Atu5463
Atu5464: Atu5464 - IclR family transcriptional regulator, at 456,691 to 458,373
Atu5464
Position (kb) 455
456
457 Strain fitness (log2 ratio) -1
0
1
2 at 454.728 kb on + strand at 454.842 kb on + strand, within Atu5462 at 454.952 kb on + strand, within Atu5462 at 454.952 kb on + strand, within Atu5462 at 454.954 kb on - strand, within Atu5462 at 454.954 kb on - strand, within Atu5462 at 455.068 kb on + strand, within Atu5462 at 455.122 kb on - strand, within Atu5462 at 455.125 kb on + strand, within Atu5462 at 455.168 kb on + strand, within Atu5462 at 455.221 kb on - strand, within Atu5462 at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.623 kb on + strand at 455.631 kb on - strand at 455.631 kb on - strand at 455.638 kb on + strand at 455.638 kb on + strand at 455.716 kb on - strand at 455.793 kb on + strand at 455.801 kb on - strand at 455.853 kb on + strand, within Atu5463 at 455.907 kb on + strand, within Atu5463 at 456.000 kb on + strand, within Atu5463 at 456.056 kb on + strand, within Atu5463 at 456.079 kb on - strand, within Atu5463 at 456.085 kb on + strand, within Atu5463 at 456.120 kb on - strand, within Atu5463 at 456.207 kb on - strand, within Atu5463 at 456.212 kb on - strand, within Atu5463 at 456.267 kb on + strand, within Atu5463 at 456.326 kb on + strand, within Atu5463 at 456.410 kb on - strand, within Atu5463 at 456.422 kb on - strand, within Atu5463 at 456.426 kb on + strand, within Atu5463 at 456.436 kb on - strand, within Atu5463 at 456.448 kb on + strand, within Atu5463 at 456.726 kb on + strand at 456.733 kb on + strand at 456.734 kb on + strand at 456.808 kb on - strand at 456.843 kb on - strand at 456.926 kb on + strand, within Atu5464 at 456.935 kb on - strand, within Atu5464 at 457.001 kb on + strand, within Atu5464 at 457.090 kb on - strand, within Atu5464 at 457.099 kb on + strand, within Atu5464 at 457.206 kb on - strand, within Atu5464 at 457.206 kb on - strand, within Atu5464 at 457.259 kb on - strand, within Atu5464 at 457.315 kb on + strand, within Atu5464 at 457.323 kb on - strand, within Atu5464 at 457.323 kb on - strand, within Atu5464 at 457.461 kb on - strand, within Atu5464 at 457.520 kb on - strand, within Atu5464 at 457.524 kb on + strand, within Atu5464 at 457.532 kb on - strand, within Atu5464 at 457.579 kb on + strand, within Atu5464 at 457.586 kb on - strand, within Atu5464 at 457.604 kb on + strand, within Atu5464 at 457.606 kb on + strand, within Atu5464 at 457.671 kb on - strand, within Atu5464
Per-strain Table
Position Strand Gene LocusTag Fraction Beta-Lactose (C) remove 454,728 + -1.0 454,842 + Atu5462 0.19 -0.1 454,952 + Atu5462 0.30 +0.2 454,952 + Atu5462 0.30 -0.4 454,954 - Atu5462 0.30 -0.7 454,954 - Atu5462 0.30 -0.5 455,068 + Atu5462 0.40 +0.3 455,122 - Atu5462 0.45 -1.3 455,125 + Atu5462 0.46 +0.3 455,168 + Atu5462 0.49 -0.2 455,221 - Atu5462 0.54 -0.3 455,623 + -0.2 455,623 + -0.8 455,623 + +0.3 455,623 + +0.1 455,623 + +0.2 455,631 - -0.3 455,631 - +0.5 455,638 + +1.0 455,638 + -0.3 455,716 - +0.4 455,793 + +0.6 455,801 - -0.7 455,853 + Atu5463 0.14 -0.2 455,907 + Atu5463 0.20 -0.8 456,000 + Atu5463 0.29 +0.6 456,056 + Atu5463 0.35 +0.2 456,079 - Atu5463 0.37 +0.1 456,085 + Atu5463 0.38 -0.1 456,120 - Atu5463 0.42 -0.1 456,207 - Atu5463 0.50 -0.3 456,212 - Atu5463 0.51 +0.2 456,267 + Atu5463 0.57 -0.0 456,326 + Atu5463 0.62 +0.0 456,410 - Atu5463 0.71 -1.2 456,422 - Atu5463 0.72 -0.0 456,426 + Atu5463 0.73 +1.7 456,436 - Atu5463 0.74 +0.7 456,448 + Atu5463 0.75 +0.9 456,726 + -0.9 456,733 + +0.5 456,734 + -0.8 456,808 - -0.9 456,843 - -0.2 456,926 + Atu5464 0.14 -0.6 456,935 - Atu5464 0.14 +0.4 457,001 + Atu5464 0.18 +0.2 457,090 - Atu5464 0.24 -0.3 457,099 + Atu5464 0.24 +0.2 457,206 - Atu5464 0.31 +1.0 457,206 - Atu5464 0.31 +1.1 457,259 - Atu5464 0.34 -0.3 457,315 + Atu5464 0.37 -0.1 457,323 - Atu5464 0.38 +2.2 457,323 - Atu5464 0.38 +0.2 457,461 - Atu5464 0.46 -1.5 457,520 - Atu5464 0.49 +0.9 457,524 + Atu5464 0.49 +1.7 457,532 - Atu5464 0.50 -1.6 457,579 + Atu5464 0.53 -0.2 457,586 - Atu5464 0.53 -0.2 457,604 + Atu5464 0.54 +0.0 457,606 + Atu5464 0.54 +0.7 457,671 - Atu5464 0.58 -0.7
Or see this region's nucleotide sequence