Experiment: LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_04065 and PS417_04070 are separated by 80 nucleotides PS417_04070 and PS417_04075 are separated by 170 nucleotides
PS417_04065: PS417_04065 - peptide ABC transporter substrate-binding protein, at 911,197 to 912,795
_04065
PS417_04070: PS417_04070 - porin, at 912,876 to 914,291
_04070
PS417_04075: PS417_04075 - peptide ABC transporter substrate-binding protein, at 914,462 to 916,066
_04075
Position (kb) 912
913
914
915 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 911.900 kb on + strand, within PS417_04065 at 911.901 kb on - strand, within PS417_04065 at 911.901 kb on - strand, within PS417_04065 at 912.061 kb on - strand, within PS417_04065 at 912.113 kb on + strand, within PS417_04065 at 912.114 kb on - strand, within PS417_04065 at 912.409 kb on - strand, within PS417_04065 at 912.491 kb on + strand, within PS417_04065 at 912.492 kb on - strand, within PS417_04065 at 912.672 kb on - strand at 912.779 kb on - strand at 912.863 kb on + strand at 912.873 kb on + strand at 912.899 kb on + strand at 912.900 kb on - strand at 912.964 kb on + strand at 912.964 kb on + strand at 912.964 kb on + strand at 912.980 kb on + strand at 913.073 kb on - strand, within PS417_04070 at 913.073 kb on - strand, within PS417_04070 at 913.280 kb on - strand, within PS417_04070 at 913.328 kb on + strand, within PS417_04070 at 913.367 kb on + strand, within PS417_04070 at 913.420 kb on + strand, within PS417_04070 at 913.484 kb on - strand, within PS417_04070 at 913.861 kb on + strand, within PS417_04070 at 913.861 kb on + strand, within PS417_04070 at 913.928 kb on - strand, within PS417_04070 at 913.928 kb on - strand, within PS417_04070 at 913.928 kb on - strand, within PS417_04070 at 913.931 kb on + strand, within PS417_04070 at 913.933 kb on + strand, within PS417_04070 at 914.071 kb on + strand, within PS417_04070 at 914.121 kb on - strand, within PS417_04070 at 914.153 kb on + strand at 914.318 kb on + strand at 914.474 kb on - strand at 914.613 kb on + strand at 914.673 kb on + strand, within PS417_04075 at 914.697 kb on + strand, within PS417_04075 at 914.727 kb on + strand, within PS417_04075 at 914.728 kb on - strand at 914.821 kb on - strand, within PS417_04075 at 914.821 kb on - strand, within PS417_04075 at 914.835 kb on + strand, within PS417_04075 at 914.916 kb on + strand, within PS417_04075 at 915.180 kb on + strand, within PS417_04075 at 915.190 kb on - strand, within PS417_04075 at 915.190 kb on - strand, within PS417_04075 at 915.190 kb on - strand, within PS417_04075
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 911,900 + PS417_04065 0.44 -2.1 911,901 - PS417_04065 0.44 -1.3 911,901 - PS417_04065 0.44 +0.2 912,061 - PS417_04065 0.54 -0.4 912,113 + PS417_04065 0.57 +0.9 912,114 - PS417_04065 0.57 -2.0 912,409 - PS417_04065 0.76 -2.8 912,491 + PS417_04065 0.81 -3.9 912,492 - PS417_04065 0.81 -3.2 912,672 - +0.2 912,779 - -2.7 912,863 + -2.4 912,873 + +0.9 912,899 + -0.7 912,900 - -3.9 912,964 + -4.5 912,964 + -3.9 912,964 + -2.1 912,980 + -2.8 913,073 - PS417_04070 0.14 -3.5 913,073 - PS417_04070 0.14 +0.6 913,280 - PS417_04070 0.29 -5.2 913,328 + PS417_04070 0.32 -3.2 913,367 + PS417_04070 0.35 -3.5 913,420 + PS417_04070 0.38 -4.0 913,484 - PS417_04070 0.43 -4.2 913,861 + PS417_04070 0.70 -1.4 913,861 + PS417_04070 0.70 -2.4 913,928 - PS417_04070 0.74 -1.9 913,928 - PS417_04070 0.74 -3.3 913,928 - PS417_04070 0.74 -3.4 913,931 + PS417_04070 0.75 -4.4 913,933 + PS417_04070 0.75 -3.8 914,071 + PS417_04070 0.84 -2.3 914,121 - PS417_04070 0.88 -2.2 914,153 + -1.7 914,318 + -4.2 914,474 - -0.7 914,613 + -1.7 914,673 + PS417_04075 0.13 -2.7 914,697 + PS417_04075 0.15 -4.6 914,727 + PS417_04075 0.17 -4.0 914,728 - -1.6 914,821 - PS417_04075 0.22 -4.9 914,821 - PS417_04075 0.22 -4.5 914,835 + PS417_04075 0.23 -5.4 914,916 + PS417_04075 0.28 -0.7 915,180 + PS417_04075 0.45 -3.2 915,190 - PS417_04075 0.45 -3.4 915,190 - PS417_04075 0.45 -3.4 915,190 - PS417_04075 0.45 -4.4
Or see this region's nucleotide sequence