Experiment: LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27790 and PS417_27795 are separated by 201 nucleotides PS417_27795 and PS417_27800 are separated by 82 nucleotides PS417_27800 and PS417_27805 are separated by 58 nucleotides PS417_27805 and PS417_27810 are separated by 22 nucleotides
PS417_27790: PS417_27790 - acetylglutamate kinase, at 5,993,123 to 5,994,028
_27790
PS417_27795: PS417_27795 - orotate phosphoribosyltransferase, at 5,994,230 to 5,994,874
_27795
PS417_27800: PS417_27800 - exodeoxyribonuclease III, at 5,994,957 to 5,995,736
_27800
PS417_27805: PS417_27805 - orotate phosphoribosyltransferase, at 5,995,795 to 5,996,166
_27805
PS417_27810: PS417_27810 - ribonuclease PH, at 5,996,189 to 5,996,911
_27810
Position (kb) 5994
5995
5996 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 5994.027 kb on - strand at 5994.162 kb on - strand at 5994.515 kb on + strand, within PS417_27795 at 5994.891 kb on - strand at 5994.891 kb on - strand at 5994.910 kb on - strand at 5994.910 kb on - strand at 5994.925 kb on - strand at 5994.930 kb on - strand at 5994.956 kb on + strand at 5995.384 kb on - strand, within PS417_27800 at 5995.389 kb on + strand, within PS417_27800 at 5995.389 kb on + strand, within PS417_27800 at 5995.389 kb on + strand, within PS417_27800 at 5995.389 kb on + strand, within PS417_27800 at 5995.404 kb on + strand, within PS417_27800 at 5995.404 kb on + strand, within PS417_27800 at 5995.404 kb on + strand, within PS417_27800 at 5995.516 kb on - strand, within PS417_27800 at 5995.557 kb on + strand, within PS417_27800 at 5995.558 kb on - strand, within PS417_27800 at 5995.558 kb on - strand, within PS417_27800 at 5995.796 kb on + strand at 5996.376 kb on + strand, within PS417_27810 at 5996.376 kb on + strand, within PS417_27810 at 5996.377 kb on - strand, within PS417_27810 at 5996.377 kb on - strand, within PS417_27810 at 5996.377 kb on - strand, within PS417_27810 at 5996.406 kb on + strand, within PS417_27810 at 5996.406 kb on + strand, within PS417_27810 at 5996.406 kb on + strand, within PS417_27810 at 5996.406 kb on + strand, within PS417_27810 at 5996.407 kb on - strand at 5996.407 kb on - strand, within PS417_27810 at 5996.407 kb on - strand, within PS417_27810 at 5996.407 kb on - strand, within PS417_27810 at 5996.407 kb on - strand, within PS417_27810 at 5996.407 kb on - strand, within PS417_27810 at 5996.571 kb on + strand, within PS417_27810 at 5996.571 kb on + strand, within PS417_27810 at 5996.571 kb on + strand, within PS417_27810 at 5996.571 kb on + strand, within PS417_27810 at 5996.572 kb on - strand, within PS417_27810 at 5996.572 kb on - strand, within PS417_27810 at 5996.572 kb on - strand, within PS417_27810
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 5,994,027 - +0.9 5,994,162 - +2.9 5,994,515 + PS417_27795 0.44 -3.6 5,994,891 - -1.7 5,994,891 - -2.8 5,994,910 - -0.7 5,994,910 - -1.2 5,994,925 - -0.8 5,994,930 - -2.7 5,994,956 + -0.2 5,995,384 - PS417_27800 0.55 -0.9 5,995,389 + PS417_27800 0.55 -2.1 5,995,389 + PS417_27800 0.55 -3.1 5,995,389 + PS417_27800 0.55 -1.2 5,995,389 + PS417_27800 0.55 -0.8 5,995,404 + PS417_27800 0.57 -1.4 5,995,404 + PS417_27800 0.57 -2.2 5,995,404 + PS417_27800 0.57 -2.4 5,995,516 - PS417_27800 0.72 -2.3 5,995,557 + PS417_27800 0.77 +0.5 5,995,558 - PS417_27800 0.77 -1.9 5,995,558 - PS417_27800 0.77 -2.1 5,995,796 + +0.0 5,996,376 + PS417_27810 0.26 -0.8 5,996,376 + PS417_27810 0.26 -1.4 5,996,377 - PS417_27810 0.26 -1.4 5,996,377 - PS417_27810 0.26 -0.3 5,996,377 - PS417_27810 0.26 +1.3 5,996,406 + PS417_27810 0.30 -1.5 5,996,406 + PS417_27810 0.30 -0.5 5,996,406 + PS417_27810 0.30 -0.1 5,996,406 + PS417_27810 0.30 +1.9 5,996,407 - -2.1 5,996,407 - PS417_27810 0.30 -1.0 5,996,407 - PS417_27810 0.30 -1.1 5,996,407 - PS417_27810 0.30 -0.0 5,996,407 - PS417_27810 0.30 +0.1 5,996,407 - PS417_27810 0.30 +1.6 5,996,571 + PS417_27810 0.53 -1.7 5,996,571 + PS417_27810 0.53 -0.3 5,996,571 + PS417_27810 0.53 -1.1 5,996,571 + PS417_27810 0.53 -1.0 5,996,572 - PS417_27810 0.53 -0.9 5,996,572 - PS417_27810 0.53 -0.3 5,996,572 - PS417_27810 0.53 -0.9
Or see this region's nucleotide sequence