Experiment: LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_27105 and PS417_27110 overlap by 4 nucleotides PS417_27110 and PS417_27115 overlap by 4 nucleotides
PS417_27105: PS417_27105 - spermidine/putrescine ABC transporter permease, at 5,851,023 to 5,851,907
_27105
PS417_27110: PS417_27110 - spermidine/putrescine ABC transporter permease, at 5,851,904 to 5,852,824
_27110
PS417_27115: PS417_27115 - putrescine ABC transporter, ATPase component <small>(from data)</small>, at 5,852,821 to 5,853,963
_27115
Position (kb) 5851
5852
5853 Strain fitness (log2 ratio) -1
0
1
2
3 at 5850.962 kb on + strand at 5850.978 kb on + strand at 5850.978 kb on + strand at 5850.978 kb on + strand at 5850.979 kb on - strand at 5850.979 kb on - strand at 5850.979 kb on - strand at 5850.985 kb on + strand at 5850.986 kb on - strand at 5850.986 kb on - strand at 5851.208 kb on + strand, within PS417_27105 at 5851.288 kb on - strand, within PS417_27105 at 5851.674 kb on - strand, within PS417_27105 at 5851.703 kb on - strand, within PS417_27105 at 5851.703 kb on - strand, within PS417_27105 at 5851.703 kb on - strand, within PS417_27105 at 5851.764 kb on + strand, within PS417_27105 at 5851.765 kb on - strand, within PS417_27105 at 5851.768 kb on + strand, within PS417_27105 at 5851.769 kb on - strand, within PS417_27105 at 5851.825 kb on + strand at 5851.853 kb on - strand at 5851.853 kb on - strand at 5851.856 kb on + strand at 5851.857 kb on - strand at 5851.907 kb on + strand at 5851.908 kb on - strand at 5852.280 kb on + strand, within PS417_27110 at 5852.281 kb on - strand, within PS417_27110 at 5852.281 kb on - strand, within PS417_27110 at 5852.281 kb on - strand, within PS417_27110 at 5852.295 kb on + strand, within PS417_27110 at 5852.296 kb on - strand, within PS417_27110 at 5852.296 kb on - strand, within PS417_27110 at 5852.297 kb on + strand, within PS417_27110 at 5852.403 kb on + strand, within PS417_27110 at 5852.601 kb on + strand, within PS417_27110 at 5852.833 kb on + strand at 5852.864 kb on + strand at 5852.864 kb on + strand at 5852.865 kb on - strand at 5852.865 kb on - strand at 5852.865 kb on - strand at 5852.865 kb on - strand at 5852.955 kb on - strand, within PS417_27115 at 5852.955 kb on - strand, within PS417_27115 at 5852.955 kb on - strand, within PS417_27115 at 5852.955 kb on - strand, within PS417_27115 at 5852.978 kb on + strand, within PS417_27115 at 5853.116 kb on + strand, within PS417_27115 at 5853.117 kb on - strand, within PS417_27115 at 5853.117 kb on - strand, within PS417_27115 at 5853.117 kb on - strand, within PS417_27115 at 5853.117 kb on - strand, within PS417_27115 at 5853.242 kb on + strand, within PS417_27115 at 5853.639 kb on + strand, within PS417_27115 at 5853.639 kb on + strand, within PS417_27115 at 5853.639 kb on + strand, within PS417_27115 at 5853.639 kb on + strand, within PS417_27115 at 5853.726 kb on - strand, within PS417_27115
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 5,850,962 + +2.9 5,850,978 + -0.1 5,850,978 + -0.4 5,850,978 + -0.6 5,850,979 - -0.0 5,850,979 - +0.5 5,850,979 - +1.9 5,850,985 + +0.0 5,850,986 - +0.3 5,850,986 - +0.5 5,851,208 + PS417_27105 0.21 -1.1 5,851,288 - PS417_27105 0.30 +1.8 5,851,674 - PS417_27105 0.74 +1.2 5,851,703 - PS417_27105 0.77 +0.9 5,851,703 - PS417_27105 0.77 +1.0 5,851,703 - PS417_27105 0.77 +1.0 5,851,764 + PS417_27105 0.84 +0.5 5,851,765 - PS417_27105 0.84 +0.6 5,851,768 + PS417_27105 0.84 +1.6 5,851,769 - PS417_27105 0.84 +1.4 5,851,825 + +1.2 5,851,853 - +0.5 5,851,853 - -0.4 5,851,856 + +0.4 5,851,857 - +0.8 5,851,907 + +1.5 5,851,908 - +1.2 5,852,280 + PS417_27110 0.41 +1.0 5,852,281 - PS417_27110 0.41 +1.9 5,852,281 - PS417_27110 0.41 +1.5 5,852,281 - PS417_27110 0.41 +0.9 5,852,295 + PS417_27110 0.42 +1.9 5,852,296 - PS417_27110 0.43 +1.4 5,852,296 - PS417_27110 0.43 +0.1 5,852,297 + PS417_27110 0.43 +0.8 5,852,403 + PS417_27110 0.54 +0.2 5,852,601 + PS417_27110 0.76 +3.1 5,852,833 + +2.9 5,852,864 + +1.6 5,852,864 + +1.2 5,852,865 - +1.0 5,852,865 - +2.2 5,852,865 - +1.1 5,852,865 - +2.4 5,852,955 - PS417_27115 0.12 +0.9 5,852,955 - PS417_27115 0.12 +0.4 5,852,955 - PS417_27115 0.12 +0.4 5,852,955 - PS417_27115 0.12 +2.3 5,852,978 + PS417_27115 0.14 +1.2 5,853,116 + PS417_27115 0.26 +1.4 5,853,117 - PS417_27115 0.26 +0.9 5,853,117 - PS417_27115 0.26 +0.2 5,853,117 - PS417_27115 0.26 +2.0 5,853,117 - PS417_27115 0.26 +1.7 5,853,242 + PS417_27115 0.37 +0.8 5,853,639 + PS417_27115 0.72 -0.1 5,853,639 + PS417_27115 0.72 +1.3 5,853,639 + PS417_27115 0.72 +1.1 5,853,639 + PS417_27115 0.72 +1.8 5,853,726 - PS417_27115 0.79 +1.2
Or see this region's nucleotide sequence