Experiment: LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_21410 and PS417_21415 overlap by 8 nucleotides PS417_21415 and PS417_21420 are separated by 19 nucleotides PS417_21420 and PS417_21425 are separated by 1 nucleotides PS417_21425 and PS417_21430 overlap by 1 nucleotides
PS417_21410: PS417_21410 - DNA polymerase III subunit delta', at 4,649,961 to 4,650,950
_21410
PS417_21415: PS417_21415 - thymidylate kinase, at 4,650,943 to 4,651,575
_21415
PS417_21420: PS417_21420 - aminodeoxychorismate lyase, at 4,651,595 to 4,652,740
_21420
PS417_21425: PS417_21425 - 4-amino-4-deoxychorismate lyase, at 4,652,742 to 4,653,557
_21425
PS417_21430: PS417_21430 - 3-oxoacyl-ACP synthase, at 4,653,557 to 4,654,801
_21430
Position (kb) 4651
4652
4653 Strain fitness (log2 ratio) -1
0
1
2
3 at 4651.827 kb on + strand, within PS417_21420 at 4651.827 kb on + strand, within PS417_21420 at 4651.827 kb on + strand, within PS417_21420 at 4651.852 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.920 kb on + strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.921 kb on - strand, within PS417_21420 at 4651.928 kb on - strand, within PS417_21420 at 4651.929 kb on + strand, within PS417_21420 at 4651.929 kb on + strand, within PS417_21420 at 4651.930 kb on - strand, within PS417_21420 at 4651.975 kb on - strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.992 kb on + strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4651.993 kb on - strand, within PS417_21420 at 4652.018 kb on + strand, within PS417_21420 at 4652.124 kb on + strand, within PS417_21420 at 4652.136 kb on + strand, within PS417_21420 at 4652.177 kb on + strand, within PS417_21420 at 4652.178 kb on - strand, within PS417_21420 at 4652.244 kb on + strand, within PS417_21420 at 4652.244 kb on + strand, within PS417_21420 at 4652.245 kb on - strand, within PS417_21420 at 4652.245 kb on - strand, within PS417_21420 at 4652.245 kb on - strand at 4652.245 kb on - strand, within PS417_21420 at 4652.409 kb on + strand, within PS417_21420 at 4652.410 kb on - strand, within PS417_21420 at 4652.435 kb on + strand, within PS417_21420 at 4652.478 kb on + strand, within PS417_21420 at 4652.524 kb on - strand, within PS417_21420 at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.720 kb on + strand at 4652.721 kb on - strand at 4652.721 kb on - strand at 4652.721 kb on - strand at 4653.015 kb on + strand, within PS417_21425 at 4653.228 kb on - strand, within PS417_21425 at 4653.493 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 4,651,827 + PS417_21420 0.20 +3.1 4,651,827 + PS417_21420 0.20 +1.0 4,651,827 + PS417_21420 0.20 +1.3 4,651,852 + PS417_21420 0.22 +0.8 4,651,920 + PS417_21420 0.28 +0.3 4,651,920 + PS417_21420 0.28 +0.9 4,651,920 + PS417_21420 0.28 +3.0 4,651,920 + PS417_21420 0.28 +1.6 4,651,920 + PS417_21420 0.28 +1.1 4,651,920 + PS417_21420 0.28 +0.8 4,651,920 + PS417_21420 0.28 +0.9 4,651,920 + PS417_21420 0.28 +0.7 4,651,920 + PS417_21420 0.28 +1.1 4,651,920 + PS417_21420 0.28 +0.8 4,651,920 + PS417_21420 0.28 +0.6 4,651,921 - PS417_21420 0.28 +0.8 4,651,921 - PS417_21420 0.28 +1.9 4,651,921 - PS417_21420 0.28 +1.3 4,651,921 - PS417_21420 0.28 +1.2 4,651,921 - PS417_21420 0.28 +0.6 4,651,928 - PS417_21420 0.29 +1.6 4,651,929 + PS417_21420 0.29 +2.0 4,651,929 + PS417_21420 0.29 +0.6 4,651,930 - PS417_21420 0.29 +1.2 4,651,975 - PS417_21420 0.33 +0.9 4,651,992 + PS417_21420 0.35 +1.3 4,651,992 + PS417_21420 0.35 +1.3 4,651,992 + PS417_21420 0.35 +1.0 4,651,993 - PS417_21420 0.35 +1.0 4,651,993 - PS417_21420 0.35 +0.7 4,651,993 - PS417_21420 0.35 +2.1 4,652,018 + PS417_21420 0.37 +0.9 4,652,124 + PS417_21420 0.46 +0.9 4,652,136 + PS417_21420 0.47 +1.0 4,652,177 + PS417_21420 0.51 +0.5 4,652,178 - PS417_21420 0.51 +1.7 4,652,244 + PS417_21420 0.57 +1.8 4,652,244 + PS417_21420 0.57 +0.8 4,652,245 - PS417_21420 0.57 +0.5 4,652,245 - PS417_21420 0.57 +0.9 4,652,245 - -0.2 4,652,245 - PS417_21420 0.57 +1.6 4,652,409 + PS417_21420 0.71 +1.3 4,652,410 - PS417_21420 0.71 +1.0 4,652,435 + PS417_21420 0.73 +1.0 4,652,478 + PS417_21420 0.77 +1.2 4,652,524 - PS417_21420 0.81 +0.8 4,652,720 + +1.0 4,652,720 + +1.1 4,652,720 + +1.1 4,652,720 + +1.5 4,652,720 + +0.8 4,652,720 + +1.0 4,652,721 - +0.2 4,652,721 - +0.7 4,652,721 - +2.1 4,653,015 + PS417_21425 0.33 +1.5 4,653,228 - PS417_21425 0.60 -0.3 4,653,493 + +0.8
Or see this region's nucleotide sequence