Experiment: LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PS417_01640 and PS417_01645 are separated by 287 nucleotides PS417_01645 and PS417_01650 are separated by 77 nucleotides PS417_01650 and PS417_01655 are separated by 150 nucleotides
PS417_01640: PS417_01640 - histidine kinase, at 359,602 to 360,687
_01640
PS417_01645: PS417_01645 - cupin, at 360,975 to 361,400
_01645
PS417_01650: PS417_01650 - chorismate mutase, at 361,478 to 362,014
_01650
PS417_01655: PS417_01655 - glutamine synthetase, at 362,165 to 363,571
_01655
Position (kb) 361
362
363 Strain fitness (log2 ratio) -1
0
1 at 360.599 kb on + strand at 360.599 kb on + strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.600 kb on - strand at 360.626 kb on - strand at 360.733 kb on + strand at 360.734 kb on - strand at 360.895 kb on + strand at 360.896 kb on - strand at 360.896 kb on - strand at 360.897 kb on + strand at 361.159 kb on + strand, within PS417_01645 at 361.159 kb on + strand, within PS417_01645 at 361.160 kb on - strand, within PS417_01645 at 361.224 kb on + strand, within PS417_01645 at 361.290 kb on - strand, within PS417_01645 at 361.483 kb on + strand at 361.483 kb on + strand at 361.484 kb on - strand at 361.606 kb on + strand, within PS417_01650 at 361.662 kb on - strand, within PS417_01650 at 361.734 kb on + strand, within PS417_01650 at 361.734 kb on + strand, within PS417_01650 at 361.734 kb on + strand, within PS417_01650 at 361.735 kb on - strand, within PS417_01650 at 361.803 kb on + strand, within PS417_01650 at 361.803 kb on + strand, within PS417_01650 at 361.804 kb on - strand, within PS417_01650 at 361.804 kb on - strand, within PS417_01650 at 362.068 kb on + strand at 362.068 kb on + strand at 362.069 kb on - strand at 362.069 kb on - strand at 362.069 kb on - strand at 362.069 kb on - strand at 362.143 kb on + strand at 362.143 kb on + strand at 362.143 kb on + strand at 362.149 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB 0.5x with Supernatant; Trichoderma harzanium TH1 grown as spores in 0.5x MS_media_noCarbon with Brachypodium distachyon roots for 27 days 0.5x remove 360,599 + -0.4 360,599 + -0.3 360,600 - +0.9 360,600 - -0.1 360,600 - +0.3 360,626 - -0.6 360,733 + -0.1 360,734 - -0.5 360,895 + -0.1 360,896 - -0.6 360,896 - -0.9 360,897 + +0.1 361,159 + PS417_01645 0.43 +1.5 361,159 + PS417_01645 0.43 -1.0 361,160 - PS417_01645 0.43 -0.9 361,224 + PS417_01645 0.58 -0.2 361,290 - PS417_01645 0.74 -0.2 361,483 + -0.7 361,483 + -0.6 361,484 - -0.1 361,606 + PS417_01650 0.24 +0.7 361,662 - PS417_01650 0.34 +1.3 361,734 + PS417_01650 0.48 -0.0 361,734 + PS417_01650 0.48 -1.0 361,734 + PS417_01650 0.48 -0.3 361,735 - PS417_01650 0.48 -0.3 361,803 + PS417_01650 0.61 -0.3 361,803 + PS417_01650 0.61 +0.1 361,804 - PS417_01650 0.61 -0.5 361,804 - PS417_01650 0.61 -0.2 362,068 + -0.3 362,068 + +0.1 362,069 - -1.1 362,069 - -1.4 362,069 - -0.5 362,069 - -0.9 362,143 + -0.7 362,143 + -0.2 362,143 + -0.2 362,149 - -0.4
Or see this region's nucleotide sequence