Experiment: D-Leucrose (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Atu0484 and Atu0485 are separated by 252 nucleotides Atu0485 and Atu0486 overlap by 1 nucleotides Atu0486 and Atu8129 are separated by 36 nucleotides Atu8129 and Atu0488 are separated by 1 nucleotides
Atu0484: Atu0484 - two component response regulator, at 473,010 to 473,660
Atu0484
Atu0485: Atu0485 - hypothetical protein, at 473,913 to 474,266
Atu0485
Atu0486: Atu0486 - dihydroorotate dehydrogenase, at 474,266 to 475,357
Atu0486
Atu8129: Atu8129 - hypothetical protein, at 475,394 to 475,891
Atu8129
Atu0488: Atu0488 - hypothetical protein, at 475,893 to 476,159
Atu0488
Position (kb) 474
475
476 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 473.292 kb on + strand, within Atu0484 at 473.292 kb on + strand, within Atu0484 at 473.313 kb on + strand, within Atu0484 at 473.379 kb on + strand, within Atu0484 at 473.399 kb on - strand, within Atu0484 at 473.568 kb on + strand, within Atu0484 at 473.598 kb on - strand at 473.783 kb on + strand at 473.898 kb on + strand at 473.898 kb on + strand at 473.906 kb on - strand at 473.969 kb on + strand, within Atu0485 at 473.977 kb on - strand, within Atu0485 at 474.181 kb on + strand, within Atu0485 at 474.203 kb on + strand, within Atu0485 at 474.300 kb on + strand at 474.482 kb on - strand, within Atu0486 at 474.574 kb on + strand, within Atu0486 at 474.632 kb on + strand, within Atu0486 at 474.725 kb on + strand, within Atu0486 at 474.846 kb on - strand, within Atu0486 at 474.904 kb on + strand, within Atu0486 at 474.904 kb on + strand, within Atu0486 at 474.944 kb on - strand, within Atu0486 at 475.302 kb on + strand at 475.310 kb on - strand at 475.372 kb on + strand at 475.509 kb on - strand, within Atu8129 at 475.517 kb on + strand, within Atu8129 at 475.531 kb on + strand, within Atu8129 at 475.539 kb on - strand, within Atu8129 at 475.539 kb on - strand, within Atu8129 at 475.544 kb on - strand, within Atu8129 at 475.559 kb on + strand, within Atu8129 at 475.589 kb on - strand, within Atu8129 at 475.640 kb on + strand, within Atu8129 at 475.667 kb on - strand, within Atu8129 at 475.711 kb on + strand, within Atu8129 at 475.720 kb on + strand, within Atu8129 at 475.738 kb on - strand, within Atu8129 at 475.738 kb on - strand, within Atu8129 at 475.764 kb on - strand, within Atu8129 at 475.776 kb on - strand, within Atu8129 at 475.776 kb on - strand, within Atu8129 at 475.791 kb on + strand, within Atu8129 at 475.793 kb on - strand, within Atu8129 at 475.799 kb on - strand, within Atu8129 at 475.876 kb on - strand at 475.956 kb on + strand, within Atu0488 at 476.121 kb on - strand, within Atu0488 at 476.125 kb on + strand, within Atu0488 at 476.131 kb on - strand, within Atu0488 at 476.191 kb on - strand at 476.191 kb on - strand at 476.193 kb on - strand at 476.223 kb on + strand at 476.225 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Leucrose (C) remove 473,292 + Atu0484 0.43 +0.2 473,292 + Atu0484 0.43 +0.5 473,313 + Atu0484 0.47 +0.2 473,379 + Atu0484 0.57 +0.1 473,399 - Atu0484 0.60 +0.1 473,568 + Atu0484 0.86 -0.3 473,598 - +0.3 473,783 + -0.2 473,898 + +0.1 473,898 + -0.2 473,906 - -0.4 473,969 + Atu0485 0.16 -0.5 473,977 - Atu0485 0.18 -0.7 474,181 + Atu0485 0.76 +0.5 474,203 + Atu0485 0.82 -0.1 474,300 + -4.3 474,482 - Atu0486 0.20 -2.5 474,574 + Atu0486 0.28 -3.7 474,632 + Atu0486 0.34 -4.1 474,725 + Atu0486 0.42 -4.3 474,846 - Atu0486 0.53 -4.4 474,904 + Atu0486 0.58 -4.2 474,904 + Atu0486 0.58 -2.9 474,944 - Atu0486 0.62 -2.7 475,302 + -2.4 475,310 - -1.1 475,372 + +0.2 475,509 - Atu8129 0.23 -0.2 475,517 + Atu8129 0.25 +0.0 475,531 + Atu8129 0.28 -0.1 475,539 - Atu8129 0.29 +0.3 475,539 - Atu8129 0.29 +1.2 475,544 - Atu8129 0.30 -0.1 475,559 + Atu8129 0.33 +0.7 475,589 - Atu8129 0.39 -0.3 475,640 + Atu8129 0.49 -0.4 475,667 - Atu8129 0.55 -0.3 475,711 + Atu8129 0.64 +0.8 475,720 + Atu8129 0.65 +0.2 475,738 - Atu8129 0.69 +0.1 475,738 - Atu8129 0.69 -0.3 475,764 - Atu8129 0.74 -0.7 475,776 - Atu8129 0.77 -0.6 475,776 - Atu8129 0.77 -0.2 475,791 + Atu8129 0.80 -0.3 475,793 - Atu8129 0.80 +0.8 475,799 - Atu8129 0.81 +0.8 475,876 - +1.7 475,956 + Atu0488 0.24 +1.3 476,121 - Atu0488 0.85 +0.1 476,125 + Atu0488 0.87 -0.5 476,131 - Atu0488 0.89 -0.5 476,191 - -0.2 476,191 - -0.3 476,193 - +1.0 476,223 + -0.3 476,225 + +0.5
Or see this region's nucleotide sequence