Strain Fitness in Agrobacterium fabrum C58 around Atu6149

Experiment: palatinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu6148 and Atu6149 are separated by 162 nucleotidesAtu6149 and Atu6150 are separated by 2 nucleotides Atu6147: Atu6147 - conserved hypothetical protein, at 165,760 to 166,743 Atu6147 Atu6148: Atu6148 - transposase, at 166,498 to 167,382 Atu6148 Atu6149: Atu6149 - hypothetical protein, at 167,545 to 167,880 Atu6149 Atu6150: Atu6150 - P-450 monooxygenase, at 167,883 to 169,142 Atu6150 Position (kb) 167 168Strain fitness (log2 ratio) -2 -1 0 1 2at 166.564 kb on + strandat 166.592 kb on - strandat 166.607 kb on - strandat 166.613 kb on + strandat 166.614 kb on + strandat 166.634 kb on + strandat 166.642 kb on - strandat 166.657 kb on + strandat 166.662 kb on + strandat 166.664 kb on - strandat 166.670 kb on - strandat 166.670 kb on - strandat 166.692 kb on - strandat 166.741 kb on - strandat 166.746 kb on - strand, within Atu6148at 166.793 kb on + strand, within Atu6148at 166.862 kb on - strand, within Atu6148at 166.871 kb on - strand, within Atu6148at 166.878 kb on - strand, within Atu6148at 166.902 kb on + strand, within Atu6148at 166.902 kb on + strand, within Atu6148at 166.910 kb on - strand, within Atu6148at 166.915 kb on + strand, within Atu6148at 167.022 kb on + strand, within Atu6148at 167.030 kb on - strand, within Atu6148at 167.030 kb on - strand, within Atu6148at 167.058 kb on + strand, within Atu6148at 167.058 kb on + strand, within Atu6148at 167.110 kb on + strand, within Atu6148at 167.128 kb on - strand, within Atu6148at 167.135 kb on + strand, within Atu6148at 167.143 kb on - strand, within Atu6148at 167.169 kb on + strand, within Atu6148at 167.179 kb on - strand, within Atu6148at 167.205 kb on + strand, within Atu6148at 167.211 kb on - strand, within Atu6148at 167.251 kb on + strand, within Atu6148at 167.254 kb on - strand, within Atu6148at 167.257 kb on - strand, within Atu6148at 167.282 kb on - strand, within Atu6148at 167.284 kb on + strand, within Atu6148at 167.284 kb on + strand, within Atu6148at 167.287 kb on - strand, within Atu6148at 167.292 kb on - strand, within Atu6148at 167.292 kb on - strand, within Atu6148at 167.296 kb on + strandat 167.304 kb on - strandat 167.306 kb on + strandat 167.439 kb on + strandat 167.471 kb on + strandat 167.515 kb on + strandat 167.556 kb on + strandat 167.563 kb on - strandat 167.631 kb on + strand, within Atu6149at 167.631 kb on + strand, within Atu6149at 167.639 kb on - strand, within Atu6149at 167.639 kb on - strand, within Atu6149at 167.659 kb on + strand, within Atu6149at 167.667 kb on - strand, within Atu6149at 167.667 kb on - strand, within Atu6149at 167.670 kb on + strand, within Atu6149at 167.674 kb on + strand, within Atu6149at 167.674 kb on + strand, within Atu6149at 167.689 kb on - strand, within Atu6149at 167.689 kb on - strand, within Atu6149at 167.896 kb on + strandat 167.964 kb on + strandat 168.037 kb on - strand, within Atu6150at 168.069 kb on + strand, within Atu6150at 168.077 kb on - strand, within Atu6150at 168.183 kb on - strand, within Atu6150at 168.259 kb on - strand, within Atu6150at 168.271 kb on - strand, within Atu6150at 168.312 kb on - strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.442 kb on + strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.450 kb on - strand, within Atu6150at 168.487 kb on - strand, within Atu6150at 168.493 kb on - strand, within Atu6150at 168.507 kb on + strand, within Atu6150at 168.538 kb on + strand, within Atu6150at 168.550 kb on - strand, within Atu6150at 168.550 kb on - strand, within Atu6150at 168.572 kb on + strand, within Atu6150at 168.580 kb on - strand, within Atu6150at 168.600 kb on + strand, within Atu6150at 168.644 kb on + strand, within Atu6150at 168.645 kb on + strand, within Atu6150at 168.688 kb on + strand, within Atu6150at 168.711 kb on + strand, within Atu6150at 168.723 kb on - strand, within Atu6150at 168.729 kb on - strand, within Atu6150at 168.767 kb on + strand, within Atu6150at 168.786 kb on - strand, within Atu6150at 168.795 kb on + strand, within Atu6150at 168.864 kb on - strand, within Atu6150at 168.870 kb on - strand, within Atu6150

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction palatinose (C)
remove
166,564 + +0.5
166,592 - -0.1
166,607 - +0.1
166,613 + -0.1
166,614 + +0.1
166,634 + -0.0
166,642 - +1.1
166,657 + -0.2
166,662 + -1.2
166,664 - +1.0
166,670 - -0.1
166,670 - +0.1
166,692 - +0.1
166,741 - +0.5
166,746 - Atu6148 0.28 -0.1
166,793 + Atu6148 0.33 +0.6
166,862 - Atu6148 0.41 -0.6
166,871 - Atu6148 0.42 +0.2
166,878 - Atu6148 0.43 -0.6
166,902 + Atu6148 0.46 +0.4
166,902 + Atu6148 0.46 -0.2
166,910 - Atu6148 0.47 +1.3
166,915 + Atu6148 0.47 +0.3
167,022 + Atu6148 0.59 -0.5
167,030 - Atu6148 0.60 +0.4
167,030 - Atu6148 0.60 +0.2
167,058 + Atu6148 0.63 -0.1
167,058 + Atu6148 0.63 -0.0
167,110 + Atu6148 0.69 -1.0
167,128 - Atu6148 0.71 -0.4
167,135 + Atu6148 0.72 +0.6
167,143 - Atu6148 0.73 +0.5
167,169 + Atu6148 0.76 -1.0
167,179 - Atu6148 0.77 -1.4
167,205 + Atu6148 0.80 +0.5
167,211 - Atu6148 0.81 +0.0
167,251 + Atu6148 0.85 -1.1
167,254 - Atu6148 0.85 -0.1
167,257 - Atu6148 0.86 -0.1
167,282 - Atu6148 0.89 -1.4
167,284 + Atu6148 0.89 +2.1
167,284 + Atu6148 0.89 +0.8
167,287 - Atu6148 0.89 -0.1
167,292 - Atu6148 0.90 +1.6
167,292 - Atu6148 0.90 +0.6
167,296 + +2.5
167,304 - -0.0
167,306 + -0.5
167,439 + -0.6
167,471 + +0.0
167,515 + +1.5
167,556 + +0.1
167,563 - +0.2
167,631 + Atu6149 0.26 -0.9
167,631 + Atu6149 0.26 +0.7
167,639 - Atu6149 0.28 -0.2
167,639 - Atu6149 0.28 -0.4
167,659 + Atu6149 0.34 +1.5
167,667 - Atu6149 0.36 +0.7
167,667 - Atu6149 0.36 +0.3
167,670 + Atu6149 0.37 +0.4
167,674 + Atu6149 0.38 +0.6
167,674 + Atu6149 0.38 +1.3
167,689 - Atu6149 0.43 +0.8
167,689 - Atu6149 0.43 +1.0
167,896 + -0.6
167,964 + -0.0
168,037 - Atu6150 0.12 +0.7
168,069 + Atu6150 0.15 +0.4
168,077 - Atu6150 0.15 +1.3
168,183 - Atu6150 0.24 +0.7
168,259 - Atu6150 0.30 -1.5
168,271 - Atu6150 0.31 +0.1
168,312 - Atu6150 0.34 -0.7
168,442 + Atu6150 0.44 +0.7
168,442 + Atu6150 0.44 +0.2
168,442 + Atu6150 0.44 -1.4
168,450 - Atu6150 0.45 +0.2
168,450 - Atu6150 0.45 +1.0
168,450 - Atu6150 0.45 -0.1
168,450 - Atu6150 0.45 -1.2
168,450 - Atu6150 0.45 -0.5
168,450 - Atu6150 0.45 +1.5
168,450 - Atu6150 0.45 +0.6
168,487 - Atu6150 0.48 -0.6
168,493 - Atu6150 0.48 +1.5
168,507 + Atu6150 0.50 -0.3
168,538 + Atu6150 0.52 +0.0
168,550 - Atu6150 0.53 -0.5
168,550 - Atu6150 0.53 +1.5
168,572 + Atu6150 0.55 -0.2
168,580 - Atu6150 0.55 +1.5
168,600 + Atu6150 0.57 -0.5
168,644 + Atu6150 0.60 -0.7
168,645 + Atu6150 0.60 -0.1
168,688 + Atu6150 0.64 -1.1
168,711 + Atu6150 0.66 -0.2
168,723 - Atu6150 0.67 +0.3
168,729 - Atu6150 0.67 -0.1
168,767 + Atu6150 0.70 +0.3
168,786 - Atu6150 0.72 +0.4
168,795 + Atu6150 0.72 -2.5
168,864 - Atu6150 0.78 +0.9
168,870 - Atu6150 0.78 +0.9

Or see this region's nucleotide sequence