Strain Fitness in Agrobacterium fabrum C58 around Atu5547

Experiment: palatinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu5546 and Atu5547 are separated by 71 nucleotidesAtu5547 and Atu5548 are separated by 34 nucleotidesAtu5548 and Atu5549 are separated by 62 nucleotides Atu5546: Atu5546 - LysR family transcriptional regulator, at 539,626 to 540,579 Atu5546 Atu5547: Atu5547 - metallo-beta-lactamase superfamily protein, at 540,651 to 541,622 Atu5547 Atu5548: Atu5548 - hypothetical protein, at 541,657 to 542,226 Atu5548 Atu5549: Atu5549 - hypothetical protein, at 542,289 to 542,816 Atu5549 Position (kb) 540 541 542Strain fitness (log2 ratio) -1 0 1 2at 539.691 kb on + strandat 539.705 kb on + strandat 539.717 kb on + strandat 539.782 kb on - strand, within Atu5546at 539.793 kb on + strand, within Atu5546at 539.808 kb on - strand, within Atu5546at 539.826 kb on - strand, within Atu5546at 539.855 kb on + strand, within Atu5546at 539.880 kb on - strand, within Atu5546at 539.922 kb on + strand, within Atu5546at 540.031 kb on - strand, within Atu5546at 540.081 kb on - strand, within Atu5546at 540.086 kb on + strand, within Atu5546at 540.201 kb on + strand, within Atu5546at 540.238 kb on + strand, within Atu5546at 540.246 kb on - strand, within Atu5546at 540.253 kb on - strand, within Atu5546at 540.269 kb on + strand, within Atu5546at 540.277 kb on - strand, within Atu5546at 540.292 kb on + strand, within Atu5546at 540.292 kb on + strand, within Atu5546at 540.300 kb on - strand, within Atu5546at 540.300 kb on - strand, within Atu5546at 540.300 kb on - strand, within Atu5546at 540.313 kb on + strand, within Atu5546at 540.493 kb on - strandat 540.630 kb on + strandat 540.654 kb on + strandat 540.662 kb on - strandat 540.666 kb on + strandat 540.744 kb on + strandat 540.753 kb on - strand, within Atu5547at 540.770 kb on - strand, within Atu5547at 540.772 kb on + strand, within Atu5547at 540.799 kb on - strand, within Atu5547at 540.799 kb on - strand, within Atu5547at 540.799 kb on - strand, within Atu5547at 540.799 kb on - strand, within Atu5547at 540.832 kb on + strand, within Atu5547at 540.917 kb on + strand, within Atu5547at 540.945 kb on - strand, within Atu5547at 541.092 kb on + strand, within Atu5547at 541.133 kb on + strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.159 kb on - strand, within Atu5547at 541.178 kb on + strand, within Atu5547at 541.186 kb on - strand, within Atu5547at 541.300 kb on - strand, within Atu5547at 541.301 kb on - strand, within Atu5547at 541.339 kb on + strand, within Atu5547at 541.415 kb on + strand, within Atu5547at 541.437 kb on + strand, within Atu5547at 541.474 kb on + strand, within Atu5547at 541.506 kb on + strand, within Atu5547at 541.508 kb on + strand, within Atu5547at 541.528 kb on + strandat 541.538 kb on - strandat 541.584 kb on - strandat 541.645 kb on - strandat 541.647 kb on + strandat 541.653 kb on - strandat 541.653 kb on - strandat 541.655 kb on - strandat 541.655 kb on - strandat 541.655 kb on - strandat 541.666 kb on + strandat 541.666 kb on + strandat 541.692 kb on - strandat 541.711 kb on + strandat 541.711 kb on + strandat 541.721 kb on + strand, within Atu5548at 541.779 kb on - strand, within Atu5548at 541.779 kb on - strand, within Atu5548at 541.826 kb on + strand, within Atu5548at 541.865 kb on + strand, within Atu5548at 541.882 kb on + strand, within Atu5548at 541.900 kb on - strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.918 kb on + strand, within Atu5548at 541.926 kb on - strand, within Atu5548at 541.926 kb on - strand, within Atu5548at 541.926 kb on - strand, within Atu5548at 541.926 kb on - strand, within Atu5548at 542.076 kb on + strand, within Atu5548at 542.080 kb on - strand, within Atu5548at 542.108 kb on + strand, within Atu5548at 542.108 kb on + strand, within Atu5548at 542.118 kb on + strand, within Atu5548at 542.160 kb on + strand, within Atu5548at 542.163 kb on - strand, within Atu5548at 542.165 kb on + strand, within Atu5548at 542.165 kb on + strand, within Atu5548at 542.173 kb on - strandat 542.248 kb on - strandat 542.255 kb on + strandat 542.257 kb on + strandat 542.257 kb on + strandat 542.263 kb on - strandat 542.278 kb on + strandat 542.294 kb on - strandat 542.294 kb on - strandat 542.328 kb on - strandat 542.346 kb on + strand, within Atu5549at 542.363 kb on + strand, within Atu5549at 542.438 kb on + strand, within Atu5549at 542.446 kb on - strand, within Atu5549at 542.470 kb on + strand, within Atu5549at 542.491 kb on - strand, within Atu5549at 542.581 kb on - strand, within Atu5549at 542.589 kb on + strand, within Atu5549at 542.618 kb on + strand, within Atu5549

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction palatinose (C)
remove
539,691 + +0.1
539,705 + +0.1
539,717 + -0.0
539,782 - Atu5546 0.16 +0.1
539,793 + Atu5546 0.18 +1.1
539,808 - Atu5546 0.19 +0.1
539,826 - Atu5546 0.21 -0.3
539,855 + Atu5546 0.24 -0.7
539,880 - Atu5546 0.27 +0.7
539,922 + Atu5546 0.31 +0.2
540,031 - Atu5546 0.42 +0.5
540,081 - Atu5546 0.48 +0.4
540,086 + Atu5546 0.48 -0.3
540,201 + Atu5546 0.60 +0.0
540,238 + Atu5546 0.64 -0.2
540,246 - Atu5546 0.65 -0.2
540,253 - Atu5546 0.66 -0.2
540,269 + Atu5546 0.67 -0.0
540,277 - Atu5546 0.68 -0.6
540,292 + Atu5546 0.70 +0.4
540,292 + Atu5546 0.70 +0.5
540,300 - Atu5546 0.71 -0.7
540,300 - Atu5546 0.71 +0.3
540,300 - Atu5546 0.71 -0.8
540,313 + Atu5546 0.72 -0.0
540,493 - -0.4
540,630 + -1.2
540,654 + -0.0
540,662 - +2.2
540,666 + +0.6
540,744 + -0.4
540,753 - Atu5547 0.10 +0.6
540,770 - Atu5547 0.12 +0.3
540,772 + Atu5547 0.12 +2.0
540,799 - Atu5547 0.15 -0.6
540,799 - Atu5547 0.15 +0.4
540,799 - Atu5547 0.15 +1.2
540,799 - Atu5547 0.15 +1.3
540,832 + Atu5547 0.19 -1.0
540,917 + Atu5547 0.27 +0.2
540,945 - Atu5547 0.30 +0.1
541,092 + Atu5547 0.45 +0.8
541,133 + Atu5547 0.50 +0.7
541,159 - Atu5547 0.52 +1.0
541,159 - Atu5547 0.52 +0.2
541,159 - Atu5547 0.52 +1.6
541,159 - Atu5547 0.52 +1.0
541,159 - Atu5547 0.52 -0.1
541,159 - Atu5547 0.52 -0.3
541,178 + Atu5547 0.54 +1.1
541,186 - Atu5547 0.55 +1.7
541,300 - Atu5547 0.67 -0.3
541,301 - Atu5547 0.67 -0.4
541,339 + Atu5547 0.71 +0.4
541,415 + Atu5547 0.79 -0.0
541,437 + Atu5547 0.81 -0.4
541,474 + Atu5547 0.85 -0.5
541,506 + Atu5547 0.88 +1.6
541,508 + Atu5547 0.88 +1.0
541,528 + -1.4
541,538 - +0.4
541,584 - +0.0
541,645 - +0.2
541,647 + +0.1
541,653 - +0.1
541,653 - +0.4
541,655 - -0.3
541,655 - +1.1
541,655 - +0.1
541,666 + +0.2
541,666 + +0.3
541,692 - +1.0
541,711 + -0.0
541,711 + -0.3
541,721 + Atu5548 0.11 +0.2
541,779 - Atu5548 0.21 +0.7
541,779 - Atu5548 0.21 -1.2
541,826 + Atu5548 0.30 -0.4
541,865 + Atu5548 0.36 +0.3
541,882 + Atu5548 0.39 +0.2
541,900 - Atu5548 0.43 +0.3
541,918 + Atu5548 0.46 +1.2
541,918 + Atu5548 0.46 -0.0
541,918 + Atu5548 0.46 -0.5
541,918 + Atu5548 0.46 -0.4
541,918 + Atu5548 0.46 +0.1
541,918 + Atu5548 0.46 +0.1
541,918 + Atu5548 0.46 +0.1
541,926 - Atu5548 0.47 +0.5
541,926 - Atu5548 0.47 -1.0
541,926 - Atu5548 0.47 +0.8
541,926 - Atu5548 0.47 +0.8
542,076 + Atu5548 0.74 +0.0
542,080 - Atu5548 0.74 -0.0
542,108 + Atu5548 0.79 +0.1
542,108 + Atu5548 0.79 +1.1
542,118 + Atu5548 0.81 +0.6
542,160 + Atu5548 0.88 +0.5
542,163 - Atu5548 0.89 -0.1
542,165 + Atu5548 0.89 +0.7
542,165 + Atu5548 0.89 -1.7
542,173 - +0.5
542,248 - +0.4
542,255 + -0.2
542,257 + +0.1
542,257 + +0.4
542,263 - +0.4
542,278 + -0.2
542,294 - +0.8
542,294 - +1.5
542,328 - -0.3
542,346 + Atu5549 0.11 +0.4
542,363 + Atu5549 0.14 +0.6
542,438 + Atu5549 0.28 -0.4
542,446 - Atu5549 0.30 +1.2
542,470 + Atu5549 0.34 +0.0
542,491 - Atu5549 0.38 -0.2
542,581 - Atu5549 0.55 +0.4
542,589 + Atu5549 0.57 -0.0
542,618 + Atu5549 0.62 +0.2

Or see this region's nucleotide sequence