Strain Fitness in Agrobacterium fabrum C58 around Atu0287

Experiment: palatinose (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntAtu0286 and Atu0287 overlap by 1 nucleotidesAtu0287 and Atu0288 are separated by 41 nucleotides Atu0286: Atu0286 - hypothetical protein, at 279,498 to 280,619 Atu0286 Atu0287: Atu0287 - hypothetical protein, at 280,619 to 282,160 Atu0287 Atu0288: Atu0288 - hypothetical protein, at 282,202 to 283,479 Atu0288 Position (kb) 280 281 282 283Strain fitness (log2 ratio) -2 -1 0 1at 279.630 kb on - strand, within Atu0286at 279.647 kb on - strand, within Atu0286at 279.728 kb on + strand, within Atu0286at 279.753 kb on + strand, within Atu0286at 279.761 kb on - strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.772 kb on + strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.780 kb on - strand, within Atu0286at 279.801 kb on + strand, within Atu0286at 279.821 kb on + strand, within Atu0286at 279.857 kb on - strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.893 kb on + strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.901 kb on - strand, within Atu0286at 279.911 kb on - strand, within Atu0286at 279.921 kb on - strand, within Atu0286at 280.004 kb on - strand, within Atu0286at 280.142 kb on + strand, within Atu0286at 280.142 kb on + strand, within Atu0286at 280.208 kb on + strand, within Atu0286at 280.230 kb on - strand, within Atu0286at 280.258 kb on + strand, within Atu0286at 280.258 kb on + strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.266 kb on - strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.332 kb on + strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.340 kb on - strand, within Atu0286at 280.415 kb on + strand, within Atu0286at 280.421 kb on - strand, within Atu0286at 280.453 kb on - strand, within Atu0286at 280.461 kb on + strand, within Atu0286at 280.500 kb on - strand, within Atu0286at 280.502 kb on + strand, within Atu0286at 280.507 kb on + strandat 280.510 kb on - strandat 280.510 kb on - strandat 280.515 kb on - strandat 280.538 kb on - strandat 280.681 kb on - strandat 280.734 kb on - strandat 280.734 kb on - strandat 280.764 kb on - strandat 280.777 kb on - strand, within Atu0287at 280.815 kb on + strand, within Atu0287at 280.815 kb on + strand, within Atu0287at 280.875 kb on - strand, within Atu0287at 280.896 kb on - strand, within Atu0287at 281.006 kb on + strand, within Atu0287at 281.147 kb on + strand, within Atu0287at 281.147 kb on - strand, within Atu0287at 281.245 kb on + strand, within Atu0287at 281.305 kb on + strand, within Atu0287at 281.305 kb on - strand, within Atu0287at 281.364 kb on - strand, within Atu0287at 281.385 kb on + strand, within Atu0287at 281.407 kb on + strand, within Atu0287at 281.407 kb on + strand, within Atu0287at 281.409 kb on - strand, within Atu0287at 281.446 kb on + strand, within Atu0287at 281.487 kb on + strand, within Atu0287at 281.492 kb on - strand, within Atu0287at 281.496 kb on - strand, within Atu0287at 281.501 kb on - strand, within Atu0287at 281.702 kb on - strand, within Atu0287at 281.746 kb on - strand, within Atu0287at 281.820 kb on - strand, within Atu0287at 281.829 kb on - strand, within Atu0287at 281.945 kb on - strand, within Atu0287at 282.033 kb on + strandat 282.037 kb on - strandat 282.079 kb on + strandat 282.223 kb on - strandat 282.293 kb on + strandat 282.293 kb on + strandat 282.363 kb on - strand, within Atu0288at 282.436 kb on - strand, within Atu0288at 282.464 kb on + strand, within Atu0288at 282.465 kb on - strand, within Atu0288at 282.583 kb on - strand, within Atu0288at 282.628 kb on + strand, within Atu0288at 282.640 kb on + strand, within Atu0288at 282.646 kb on - strand, within Atu0288at 282.669 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.671 kb on + strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.679 kb on - strand, within Atu0288at 282.702 kb on - strand, within Atu0288at 282.727 kb on + strand, within Atu0288at 282.746 kb on + strand, within Atu0288at 282.754 kb on - strand, within Atu0288at 282.773 kb on + strand, within Atu0288at 282.774 kb on - strand, within Atu0288at 282.774 kb on - strand, within Atu0288at 282.781 kb on - strand, within Atu0288at 282.796 kb on - strand, within Atu0288at 282.875 kb on + strand, within Atu0288at 282.883 kb on - strand, within Atu0288at 282.883 kb on - strand, within Atu0288at 282.900 kb on + strand, within Atu0288at 282.908 kb on - strand, within Atu0288at 282.910 kb on + strand, within Atu0288at 282.910 kb on + strand, within Atu0288at 282.918 kb on - strand, within Atu0288at 282.961 kb on - strand, within Atu0288at 282.967 kb on + strand, within Atu0288at 283.003 kb on - strand, within Atu0288at 283.003 kb on - strand, within Atu0288at 283.013 kb on - strand, within Atu0288at 283.013 kb on - strand, within Atu0288at 283.117 kb on + strand, within Atu0288at 283.132 kb on + strand, within Atu0288at 283.137 kb on + strand, within Atu0288

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction palatinose (C)
remove
279,630 - Atu0286 0.12 +0.0
279,647 - Atu0286 0.13 -0.0
279,728 + Atu0286 0.20 -0.1
279,753 + Atu0286 0.23 +1.0
279,761 - Atu0286 0.23 -0.1
279,772 + Atu0286 0.24 -1.8
279,772 + Atu0286 0.24 +0.3
279,772 + Atu0286 0.24 +0.1
279,772 + Atu0286 0.24 -0.5
279,772 + Atu0286 0.24 +0.4
279,772 + Atu0286 0.24 -0.1
279,780 - Atu0286 0.25 +0.2
279,780 - Atu0286 0.25 +0.7
279,780 - Atu0286 0.25 +0.3
279,801 + Atu0286 0.27 +0.1
279,821 + Atu0286 0.29 +0.5
279,857 - Atu0286 0.32 -0.1
279,893 + Atu0286 0.35 -1.7
279,893 + Atu0286 0.35 -0.1
279,893 + Atu0286 0.35 -0.0
279,893 + Atu0286 0.35 +0.4
279,893 + Atu0286 0.35 -0.1
279,893 + Atu0286 0.35 +0.0
279,893 + Atu0286 0.35 +0.1
279,901 - Atu0286 0.36 -0.5
279,901 - Atu0286 0.36 -0.2
279,901 - Atu0286 0.36 -0.3
279,911 - Atu0286 0.37 +0.1
279,921 - Atu0286 0.38 +0.8
280,004 - Atu0286 0.45 +0.3
280,142 + Atu0286 0.57 +0.1
280,142 + Atu0286 0.57 +1.2
280,208 + Atu0286 0.63 -0.3
280,230 - Atu0286 0.65 -1.4
280,258 + Atu0286 0.68 +0.3
280,258 + Atu0286 0.68 +0.5
280,266 - Atu0286 0.68 -0.1
280,266 - Atu0286 0.68 -1.0
280,266 - Atu0286 0.68 -0.1
280,332 + Atu0286 0.74 -0.1
280,332 + Atu0286 0.74 +0.0
280,332 + Atu0286 0.74 -0.8
280,332 + Atu0286 0.74 -0.3
280,332 + Atu0286 0.74 +0.1
280,332 + Atu0286 0.74 -1.2
280,340 - Atu0286 0.75 +0.0
280,340 - Atu0286 0.75 -0.0
280,340 - Atu0286 0.75 +0.5
280,415 + Atu0286 0.82 -0.3
280,421 - Atu0286 0.82 -0.2
280,453 - Atu0286 0.85 +1.1
280,461 + Atu0286 0.86 +0.5
280,500 - Atu0286 0.89 +1.3
280,502 + Atu0286 0.89 -0.1
280,507 + +0.5
280,510 - -0.1
280,510 - -0.1
280,515 - +0.9
280,538 - -0.1
280,681 - -0.2
280,734 - -0.1
280,734 - -0.1
280,764 - +0.3
280,777 - Atu0287 0.10 +0.5
280,815 + Atu0287 0.13 +0.5
280,815 + Atu0287 0.13 +0.2
280,875 - Atu0287 0.17 +0.1
280,896 - Atu0287 0.18 +0.2
281,006 + Atu0287 0.25 -0.1
281,147 + Atu0287 0.34 +0.3
281,147 - Atu0287 0.34 +1.5
281,245 + Atu0287 0.41 +0.6
281,305 + Atu0287 0.44 +0.1
281,305 - Atu0287 0.44 -0.1
281,364 - Atu0287 0.48 +0.4
281,385 + Atu0287 0.50 -0.1
281,407 + Atu0287 0.51 +0.3
281,407 + Atu0287 0.51 +0.3
281,409 - Atu0287 0.51 +0.1
281,446 + Atu0287 0.54 +0.9
281,487 + Atu0287 0.56 +0.2
281,492 - Atu0287 0.57 +0.8
281,496 - Atu0287 0.57 +0.2
281,501 - Atu0287 0.57 +1.0
281,702 - Atu0287 0.70 -0.1
281,746 - Atu0287 0.73 +0.4
281,820 - Atu0287 0.78 -0.6
281,829 - Atu0287 0.78 +0.6
281,945 - Atu0287 0.86 +0.4
282,033 + +0.1
282,037 - +0.2
282,079 + +0.3
282,223 - -0.1
282,293 + +0.6
282,293 + +0.3
282,363 - Atu0288 0.13 -0.1
282,436 - Atu0288 0.18 +0.1
282,464 + Atu0288 0.21 +0.0
282,465 - Atu0288 0.21 -0.1
282,583 - Atu0288 0.30 -0.2
282,628 + Atu0288 0.33 +0.4
282,640 + Atu0288 0.34 +0.3
282,646 - Atu0288 0.35 +0.3
282,669 + Atu0288 0.37 -0.0
282,671 + Atu0288 0.37 +1.6
282,671 + Atu0288 0.37 +1.4
282,671 + Atu0288 0.37 -0.2
282,679 - Atu0288 0.37 -0.1
282,679 - Atu0288 0.37 -0.5
282,679 - Atu0288 0.37 -0.4
282,679 - Atu0288 0.37 -0.1
282,702 - Atu0288 0.39 +0.2
282,727 + Atu0288 0.41 +0.1
282,746 + Atu0288 0.43 -0.9
282,754 - Atu0288 0.43 -0.0
282,773 + Atu0288 0.45 +0.6
282,774 - Atu0288 0.45 -0.5
282,774 - Atu0288 0.45 -0.6
282,781 - Atu0288 0.45 -0.4
282,796 - Atu0288 0.46 +0.6
282,875 + Atu0288 0.53 -0.0
282,883 - Atu0288 0.53 +0.4
282,883 - Atu0288 0.53 +0.2
282,900 + Atu0288 0.55 -0.4
282,908 - Atu0288 0.55 +0.4
282,910 + Atu0288 0.55 +0.3
282,910 + Atu0288 0.55 +0.2
282,918 - Atu0288 0.56 +0.1
282,961 - Atu0288 0.59 +0.3
282,967 + Atu0288 0.60 -1.4
283,003 - Atu0288 0.63 +0.1
283,003 - Atu0288 0.63 -0.2
283,013 - Atu0288 0.63 +0.6
283,013 - Atu0288 0.63 +0.6
283,117 + Atu0288 0.72 +0.0
283,132 + Atu0288 0.73 -0.8
283,137 + Atu0288 0.73 -0.2

Or see this region's nucleotide sequence