Experiment: CTR
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybaW and ybaX are separated by 51 nucleotides ybaX and ybaE are separated by 64 nucleotides ybaE and cof are separated by 99 nucleotides
b0443: ybaW - hypothetical protein (NCBI), at 463,626 to 464,024
ybaW
b0444: ybaX - predicted aluminum resistance protein (NCBI), at 464,076 to 464,771
ybaX
b0445: ybaE - predicted transporter subunit: periplasmic-binding component of ABC superfamily (NCBI), at 464,836 to 466,536
ybaE
b0446: cof - orf, hypothetical protein (VIMSS), at 466,636 to 467,454
cof
Position (kb) 464
465
466
467 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 463.879 kb on + strand, within ybaW at 463.879 kb on + strand, within ybaW at 463.897 kb on - strand, within ybaW at 463.911 kb on + strand, within ybaW at 463.920 kb on - strand, within ybaW at 463.920 kb on - strand, within ybaW at 463.977 kb on + strand, within ybaW at 463.977 kb on + strand, within ybaW at 463.977 kb on + strand, within ybaW at 463.977 kb on + strand, within ybaW at 463.979 kb on - strand, within ybaW at 463.986 kb on + strand at 463.986 kb on + strand at 464.035 kb on + strand at 464.035 kb on + strand at 464.209 kb on - strand, within ybaX at 464.209 kb on - strand, within ybaX at 464.226 kb on - strand, within ybaX at 464.230 kb on + strand, within ybaX at 464.287 kb on - strand, within ybaX at 464.332 kb on - strand, within ybaX at 464.332 kb on - strand, within ybaX at 464.344 kb on - strand, within ybaX at 464.346 kb on - strand, within ybaX at 464.346 kb on - strand, within ybaX at 464.433 kb on - strand, within ybaX at 464.433 kb on - strand, within ybaX at 464.511 kb on - strand, within ybaX at 464.511 kb on - strand, within ybaX at 464.523 kb on + strand, within ybaX at 464.523 kb on + strand, within ybaX at 464.551 kb on + strand, within ybaX at 464.553 kb on - strand, within ybaX at 464.553 kb on - strand, within ybaX at 464.557 kb on - strand, within ybaX at 464.557 kb on - strand, within ybaX at 464.559 kb on - strand, within ybaX at 464.569 kb on + strand, within ybaX at 464.579 kb on + strand, within ybaX at 464.582 kb on - strand, within ybaX at 464.589 kb on - strand, within ybaX at 464.594 kb on - strand, within ybaX at 464.675 kb on - strand, within ybaX at 464.708 kb on - strand at 464.772 kb on + strand at 464.772 kb on + strand at 464.803 kb on + strand at 464.926 kb on + strand at 464.969 kb on + strand at 464.969 kb on + strand at 464.977 kb on - strand at 464.977 kb on - strand at 465.058 kb on + strand, within ybaE at 465.143 kb on - strand, within ybaE at 465.180 kb on + strand, within ybaE at 465.181 kb on + strand, within ybaE at 465.181 kb on + strand, within ybaE at 465.194 kb on - strand, within ybaE at 465.194 kb on - strand, within ybaE at 465.196 kb on - strand, within ybaE at 465.246 kb on - strand, within ybaE at 465.290 kb on + strand, within ybaE at 465.293 kb on - strand, within ybaE at 465.307 kb on - strand, within ybaE at 465.449 kb on - strand, within ybaE at 465.530 kb on + strand, within ybaE at 465.538 kb on - strand, within ybaE at 465.539 kb on + strand, within ybaE at 465.550 kb on + strand, within ybaE at 465.556 kb on - strand, within ybaE at 465.594 kb on + strand, within ybaE at 465.594 kb on + strand, within ybaE at 465.594 kb on + strand, within ybaE at 465.643 kb on - strand, within ybaE at 465.667 kb on + strand, within ybaE at 465.818 kb on - strand, within ybaE at 465.863 kb on - strand, within ybaE at 465.924 kb on + strand, within ybaE at 465.937 kb on + strand, within ybaE at 465.961 kb on + strand, within ybaE at 465.964 kb on + strand, within ybaE at 465.964 kb on + strand, within ybaE at 465.964 kb on + strand, within ybaE at 465.964 kb on + strand, within ybaE at 465.972 kb on - strand, within ybaE at 466.029 kb on + strand, within ybaE at 466.060 kb on - strand, within ybaE at 466.102 kb on + strand, within ybaE at 466.102 kb on + strand, within ybaE at 466.138 kb on - strand, within ybaE at 466.138 kb on - strand, within ybaE at 466.145 kb on + strand, within ybaE at 466.168 kb on + strand, within ybaE at 466.260 kb on + strand, within ybaE at 466.260 kb on + strand, within ybaE at 466.289 kb on - strand, within ybaE at 466.419 kb on - strand at 466.471 kb on - strand at 466.471 kb on - strand at 466.500 kb on + strand at 466.508 kb on - strand at 466.508 kb on - strand at 466.613 kb on - strand at 466.613 kb on - strand at 466.613 kb on - strand at 466.624 kb on - strand at 466.774 kb on - strand, within cof at 466.903 kb on - strand, within cof at 466.913 kb on + strand, within cof at 466.913 kb on + strand, within cof at 466.923 kb on + strand, within cof at 467.055 kb on + strand, within cof at 467.055 kb on + strand, within cof at 467.096 kb on + strand, within cof at 467.106 kb on + strand, within cof at 467.209 kb on + strand, within cof at 467.209 kb on + strand, within cof at 467.226 kb on - strand, within cof at 467.250 kb on + strand, within cof at 467.260 kb on + strand, within cof at 467.260 kb on + strand, within cof at 467.268 kb on - strand, within cof at 467.335 kb on + strand, within cof at 467.350 kb on + strand, within cof at 467.354 kb on - strand, within cof at 467.354 kb on - strand, within cof at 467.426 kb on + strand at 467.426 kb on + strand at 467.454 kb on + strand at 467.454 kb on + strand at 467.472 kb on - strand at 467.472 kb on - strand at 467.472 kb on - strand at 467.532 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction CTR remove 463,879 + ybaW b0443 0.63 +1.0 463,879 + ybaW b0443 0.63 -2.3 463,897 - ybaW b0443 0.68 -1.7 463,911 + ybaW b0443 0.71 -0.6 463,920 - ybaW b0443 0.74 -1.1 463,920 - ybaW b0443 0.74 -0.2 463,977 + ybaW b0443 0.88 +1.2 463,977 + ybaW b0443 0.88 -0.7 463,977 + ybaW b0443 0.88 +1.6 463,977 + ybaW b0443 0.88 -0.8 463,979 - ybaW b0443 0.88 +0.3 463,986 + +0.1 463,986 + -2.1 464,035 + +2.4 464,035 + -0.5 464,209 - ybaX b0444 0.19 -1.3 464,209 - ybaX b0444 0.19 -1.2 464,226 - ybaX b0444 0.22 -0.4 464,230 + ybaX b0444 0.22 -1.6 464,287 - ybaX b0444 0.30 +0.2 464,332 - ybaX b0444 0.37 +0.2 464,332 - ybaX b0444 0.37 -0.7 464,344 - ybaX b0444 0.39 +2.1 464,346 - ybaX b0444 0.39 -0.3 464,346 - ybaX b0444 0.39 -1.8 464,433 - ybaX b0444 0.51 -2.5 464,433 - ybaX b0444 0.51 +0.0 464,511 - ybaX b0444 0.62 -0.6 464,511 - ybaX b0444 0.62 -0.3 464,523 + ybaX b0444 0.64 +0.1 464,523 + ybaX b0444 0.64 +0.4 464,551 + ybaX b0444 0.68 +1.9 464,553 - ybaX b0444 0.69 -0.6 464,553 - ybaX b0444 0.69 +1.8 464,557 - ybaX b0444 0.69 +1.6 464,557 - ybaX b0444 0.69 -0.9 464,559 - ybaX b0444 0.69 -0.2 464,569 + ybaX b0444 0.71 -1.2 464,579 + ybaX b0444 0.72 -1.9 464,582 - ybaX b0444 0.73 -0.3 464,589 - ybaX b0444 0.74 -0.7 464,594 - ybaX b0444 0.74 -1.9 464,675 - ybaX b0444 0.86 +0.8 464,708 - -0.8 464,772 + +3.7 464,772 + +3.7 464,803 + -1.0 464,926 + -1.3 464,969 + +1.8 464,969 + -1.4 464,977 - +0.1 464,977 - -0.1 465,058 + ybaE b0445 0.13 -1.5 465,143 - ybaE b0445 0.18 -1.8 465,180 + ybaE b0445 0.20 +2.1 465,181 + ybaE b0445 0.20 -0.3 465,181 + ybaE b0445 0.20 -0.3 465,194 - ybaE b0445 0.21 -0.6 465,194 - ybaE b0445 0.21 +2.6 465,196 - ybaE b0445 0.21 +2.4 465,246 - ybaE b0445 0.24 +1.3 465,290 + ybaE b0445 0.27 +0.3 465,293 - ybaE b0445 0.27 -0.8 465,307 - ybaE b0445 0.28 -0.0 465,449 - ybaE b0445 0.36 +0.9 465,530 + ybaE b0445 0.41 -1.3 465,538 - ybaE b0445 0.41 +1.2 465,539 + ybaE b0445 0.41 +0.3 465,550 + ybaE b0445 0.42 -0.7 465,556 - ybaE b0445 0.42 -0.7 465,594 + ybaE b0445 0.45 -1.0 465,594 + ybaE b0445 0.45 +0.9 465,594 + ybaE b0445 0.45 -1.9 465,643 - ybaE b0445 0.47 +1.8 465,667 + ybaE b0445 0.49 +0.6 465,818 - ybaE b0445 0.58 +2.1 465,863 - ybaE b0445 0.60 -0.4 465,924 + ybaE b0445 0.64 -2.6 465,937 + ybaE b0445 0.65 -2.0 465,961 + ybaE b0445 0.66 +0.8 465,964 + ybaE b0445 0.66 +3.2 465,964 + ybaE b0445 0.66 -0.2 465,964 + ybaE b0445 0.66 -0.2 465,964 + ybaE b0445 0.66 +1.2 465,972 - ybaE b0445 0.67 -1.0 466,029 + ybaE b0445 0.70 -2.3 466,060 - ybaE b0445 0.72 -1.5 466,102 + ybaE b0445 0.74 +1.0 466,102 + ybaE b0445 0.74 +0.5 466,138 - ybaE b0445 0.77 +1.8 466,138 - ybaE b0445 0.77 -0.4 466,145 + ybaE b0445 0.77 +1.1 466,168 + ybaE b0445 0.78 -0.2 466,260 + ybaE b0445 0.84 +0.7 466,260 + ybaE b0445 0.84 +0.9 466,289 - ybaE b0445 0.85 -0.3 466,419 - -0.1 466,471 - +3.9 466,471 - -0.0 466,500 + +0.5 466,508 - -0.1 466,508 - +0.7 466,613 - +0.4 466,613 - -0.1 466,613 - -0.8 466,624 - -0.8 466,774 - cof b0446 0.17 -0.4 466,903 - cof b0446 0.33 -0.6 466,913 + cof b0446 0.34 +0.5 466,913 + cof b0446 0.34 -0.4 466,923 + cof b0446 0.35 -0.1 467,055 + cof b0446 0.51 +1.0 467,055 + cof b0446 0.51 -1.6 467,096 + cof b0446 0.56 +0.2 467,106 + cof b0446 0.57 -0.2 467,209 + cof b0446 0.70 -0.1 467,209 + cof b0446 0.70 -0.9 467,226 - cof b0446 0.72 +0.2 467,250 + cof b0446 0.75 -0.9 467,260 + cof b0446 0.76 -0.7 467,260 + cof b0446 0.76 -0.9 467,268 - cof b0446 0.77 -0.5 467,335 + cof b0446 0.85 +0.1 467,350 + cof b0446 0.87 -0.7 467,354 - cof b0446 0.88 -0.2 467,354 - cof b0446 0.88 +1.5 467,426 + +0.1 467,426 + +0.6 467,454 + +0.4 467,454 + -0.6 467,472 - +0.4 467,472 - +0.2 467,472 - -1.0 467,532 - +0.4
Or see this region's nucleotide sequence