Experiment: PoolT9D26
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt hcr and ybjW are separated by 11 nucleotides ybjW and ybjE are separated by 143 nucleotides
b0872: hcr - HCP oxidoreductase, NADH-dependent (NCBI), at 910,405 to 911,373
hcr
b0873: ybjW - putative prismane (VIMSS), at 911,385 to 913,037
ybjW
b0874: ybjE - putative surface protein (VIMSS), at 913,181 to 914,080
ybjE
Position (kb)
911
912
913
914 Strain fitness (log2 ratio)
-2
-1
0
1
2
3
4 at 910.452 kb on - strand at 910.452 kb on - strand at 910.738 kb on + strand, within hcr at 910.816 kb on - strand, within hcr at 910.826 kb on - strand at 911.125 kb on - strand, within hcr at 911.167 kb on - strand, within hcr at 911.394 kb on + strand at 911.394 kb on + strand at 911.476 kb on - strand at 911.566 kb on + strand, within ybjW at 911.776 kb on - strand, within ybjW at 911.833 kb on + strand, within ybjW at 911.862 kb on + strand, within ybjW at 911.956 kb on + strand, within ybjW at 911.956 kb on + strand, within ybjW at 912.055 kb on - strand, within ybjW at 912.104 kb on + strand, within ybjW at 912.278 kb on - strand, within ybjW at 912.349 kb on - strand, within ybjW at 912.360 kb on + strand, within ybjW at 912.406 kb on - strand, within ybjW at 912.463 kb on + strand, within ybjW at 912.465 kb on - strand, within ybjW at 912.558 kb on + strand, within ybjW at 912.630 kb on + strand, within ybjW at 912.717 kb on + strand, within ybjW at 912.721 kb on - strand, within ybjW at 912.804 kb on + strand, within ybjW at 912.813 kb on + strand, within ybjW at 912.813 kb on + strand, within ybjW at 912.813 kb on + strand, within ybjW at 912.861 kb on + strand, within ybjW at 912.869 kb on - strand, within ybjW at 912.869 kb on - strand, within ybjW at 912.968 kb on + strand at 913.267 kb on + strand at 913.291 kb on + strand, within ybjE at 913.291 kb on + strand, within ybjE at 913.317 kb on + strand, within ybjE at 913.317 kb on + strand, within ybjE at 913.335 kb on - strand, within ybjE at 913.362 kb on - strand, within ybjE at 913.362 kb on - strand, within ybjE at 913.426 kb on + strand, within ybjE at 913.505 kb on - strand, within ybjE at 913.568 kb on + strand, within ybjE at 913.568 kb on + strand, within ybjE at 913.577 kb on - strand, within ybjE at 913.577 kb on - strand, within ybjE at 913.597 kb on - strand, within ybjE at 913.597 kb on - strand, within ybjE at 913.611 kb on - strand, within ybjE at 913.611 kb on - strand, within ybjE at 913.708 kb on + strand, within ybjE at 913.729 kb on - strand, within ybjE at 913.733 kb on + strand, within ybjE at 913.733 kb on + strand, within ybjE at 913.750 kb on + strand, within ybjE at 913.812 kb on + strand, within ybjE at 913.824 kb on + strand, within ybjE at 913.824 kb on + strand, within ybjE at 913.830 kb on - strand, within ybjE at 913.897 kb on - strand, within ybjE at 913.914 kb on + strand, within ybjE at 913.922 kb on + strand, within ybjE at 913.924 kb on - strand, within ybjE at 913.934 kb on + strand, within ybjE at 913.934 kb on + strand, within ybjE at 913.939 kb on + strand, within ybjE at 914.030 kb on + strand at 914.035 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction PoolT9D26 remove 910,452 - +0.5 910,452 - -1.9 910,738 + hcr b0872 0.34 -2.1 910,816 - hcr b0872 0.42 +0.1 910,826 - +3.2 911,125 - hcr b0872 0.74 -0.2 911,167 - hcr b0872 0.79 +2.5 911,394 + -1.0 911,394 + +1.1 911,476 - +0.0 911,566 + ybjW b0873 0.11 -0.2 911,776 - ybjW b0873 0.24 -0.1 911,833 + ybjW b0873 0.27 +0.1 911,862 + ybjW b0873 0.29 +0.9 911,956 + ybjW b0873 0.35 +2.6 911,956 + ybjW b0873 0.35 -1.2 912,055 - ybjW b0873 0.41 -0.3 912,104 + ybjW b0873 0.43 -1.2 912,278 - ybjW b0873 0.54 -0.3 912,349 - ybjW b0873 0.58 +2.9 912,360 + ybjW b0873 0.59 +0.2 912,406 - ybjW b0873 0.62 -1.2 912,463 + ybjW b0873 0.65 +2.8 912,465 - ybjW b0873 0.65 +4.6 912,558 + ybjW b0873 0.71 +0.2 912,630 + ybjW b0873 0.75 -0.8 912,717 + ybjW b0873 0.81 -0.0 912,721 - ybjW b0873 0.81 -0.3 912,804 + ybjW b0873 0.86 -0.3 912,813 + ybjW b0873 0.86 +1.3 912,813 + ybjW b0873 0.86 +0.2 912,813 + ybjW b0873 0.86 +0.3 912,861 + ybjW b0873 0.89 +0.1 912,869 - ybjW b0873 0.90 +1.5 912,869 - ybjW b0873 0.90 -0.6 912,968 + +0.0 913,267 + -2.0 913,291 + ybjE b0874 0.12 -0.1 913,291 + ybjE b0874 0.12 +0.1 913,317 + ybjE b0874 0.15 -1.8 913,317 + ybjE b0874 0.15 -1.6 913,335 - ybjE b0874 0.17 -1.7 913,362 - ybjE b0874 0.20 +1.0 913,362 - ybjE b0874 0.20 -0.3 913,426 + ybjE b0874 0.27 +2.3 913,505 - ybjE b0874 0.36 +1.0 913,568 + ybjE b0874 0.43 -0.3 913,568 + ybjE b0874 0.43 -0.2 913,577 - ybjE b0874 0.44 -0.8 913,577 - ybjE b0874 0.44 +0.0 913,597 - ybjE b0874 0.46 +1.2 913,597 - ybjE b0874 0.46 +0.3 913,611 - ybjE b0874 0.48 -2.6 913,611 - ybjE b0874 0.48 +0.2 913,708 + ybjE b0874 0.59 +0.0 913,729 - ybjE b0874 0.61 +0.4 913,733 + ybjE b0874 0.61 -1.3 913,733 + ybjE b0874 0.61 +1.5 913,750 + ybjE b0874 0.63 -0.1 913,812 + ybjE b0874 0.70 -1.4 913,824 + ybjE b0874 0.71 -0.2 913,824 + ybjE b0874 0.71 +2.5 913,830 - ybjE b0874 0.72 -0.2 913,897 - ybjE b0874 0.80 +0.5 913,914 + ybjE b0874 0.81 -0.2 913,922 + ybjE b0874 0.82 -0.8 913,924 - ybjE b0874 0.83 +0.1 913,934 + ybjE b0874 0.84 -0.2 913,934 + ybjE b0874 0.84 -0.3 913,939 + ybjE b0874 0.84 +0.2 914,030 + +1.2 914,035 + -0.6
Or see this region's nucleotide sequence