Strain Fitness in Escherichia coli BW25113 around b2353

Experiment: PoolT9D23

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyfdI and tfaS are separated by 352 nucleotidestfaS and yfdK overlap by 29 nucleotidesyfdK and yfdL are separated by 26 nucleotides b2352: yfdI - CPS-53 (KpLE1) prophage; predicted inner membrane protein (NCBI), at 2,467,153 to 2,468,484 yfdI b2353: tfaS - orf, hypothetical protein (VIMSS), at 2,468,837 to 2,469,127 tfaS b2354: yfdK - CPS-53 (KpLE1) prophage; conserved protein (NCBI), at 2,469,099 to 2,469,539 yfdK b2355: yfdL - CPS-53 (KpLE1) prophage; conserved protein (RefSeq), at 2,469,566 to 2,470,144 yfdL Position (kb) 2468 2469 2470Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2467.924 kb on + strand, within yfdIat 2467.924 kb on + strand, within yfdIat 2467.937 kb on + strand, within yfdIat 2467.998 kb on + strand, within yfdIat 2468.061 kb on + strand, within yfdIat 2468.407 kb on + strandat 2468.525 kb on - strandat 2468.525 kb on - strandat 2468.527 kb on - strandat 2468.527 kb on - strandat 2468.527 kb on - strandat 2468.553 kb on - strandat 2468.553 kb on - strandat 2468.557 kb on - strandat 2468.566 kb on - strandat 2468.566 kb on - strandat 2468.592 kb on - strandat 2468.592 kb on - strandat 2468.593 kb on - strandat 2468.595 kb on - strandat 2468.595 kb on - strandat 2468.651 kb on - strandat 2468.651 kb on - strandat 2468.658 kb on - strandat 2468.660 kb on + strandat 2468.662 kb on - strandat 2468.665 kb on + strandat 2468.673 kb on - strandat 2468.676 kb on + strandat 2468.676 kb on + strandat 2468.676 kb on + strandat 2468.711 kb on + strandat 2468.715 kb on - strandat 2468.717 kb on + strandat 2468.719 kb on - strandat 2468.722 kb on + strandat 2468.737 kb on + strandat 2468.757 kb on - strandat 2468.757 kb on - strandat 2468.764 kb on - strandat 2468.778 kb on - strandat 2468.778 kb on - strandat 2468.804 kb on + strandat 2468.808 kb on - strandat 2468.808 kb on - strandat 2468.808 kb on - strandat 2468.812 kb on + strandat 2468.818 kb on + strandat 2468.818 kb on + strandat 2468.819 kb on + strandat 2468.819 kb on + strandat 2468.821 kb on - strandat 2468.829 kb on - strandat 2468.838 kb on - strandat 2468.887 kb on + strand, within tfaSat 2468.890 kb on + strand, within tfaSat 2468.895 kb on + strand, within tfaSat 2468.895 kb on + strand, within tfaSat 2468.895 kb on - strand, within tfaSat 2468.897 kb on - strand, within tfaSat 2468.897 kb on - strand, within tfaSat 2468.903 kb on - strand, within tfaSat 2468.903 kb on - strand, within tfaSat 2468.905 kb on + strand, within tfaSat 2468.905 kb on + strand, within tfaSat 2468.905 kb on + strand, within tfaSat 2468.906 kb on - strand, within tfaSat 2468.912 kb on + strand, within tfaSat 2468.913 kb on - strand, within tfaSat 2468.913 kb on - strand, within tfaSat 2468.918 kb on + strand, within tfaSat 2468.926 kb on - strand, within tfaSat 2468.936 kb on + strand, within tfaSat 2468.936 kb on + strand, within tfaSat 2468.936 kb on - strand, within tfaSat 2468.939 kb on + strand, within tfaSat 2468.940 kb on + strand, within tfaSat 2468.940 kb on + strand, within tfaSat 2468.946 kb on - strand, within tfaSat 2468.958 kb on - strand, within tfaSat 2468.960 kb on - strand, within tfaSat 2469.002 kb on + strand, within tfaSat 2469.006 kb on - strand, within tfaSat 2469.015 kb on + strand, within tfaSat 2469.019 kb on + strand, within tfaSat 2469.042 kb on - strand, within tfaSat 2469.042 kb on - strand, within tfaSat 2469.057 kb on - strand, within tfaSat 2469.057 kb on - strand, within tfaSat 2469.095 kb on + strand, within tfaSat 2469.095 kb on + strand, within tfaSat 2469.100 kb on + strandat 2469.105 kb on + strandat 2469.115 kb on + strandat 2469.131 kb on + strandat 2469.164 kb on + strand, within yfdKat 2469.164 kb on + strand, within yfdKat 2469.164 kb on + strand, within yfdKat 2469.164 kb on + strand, within yfdKat 2469.164 kb on + strand, within yfdKat 2469.164 kb on + strand, within yfdKat 2469.164 kb on + strand, within yfdKat 2469.164 kb on + strand, within yfdKat 2469.170 kb on - strand, within yfdKat 2469.170 kb on - strand, within yfdKat 2469.172 kb on - strand, within yfdKat 2469.179 kb on + strand, within yfdKat 2469.210 kb on + strand, within yfdKat 2469.210 kb on + strand, within yfdKat 2469.236 kb on - strand, within yfdKat 2469.241 kb on - strand, within yfdKat 2469.331 kb on - strand, within yfdKat 2469.331 kb on - strand, within yfdKat 2469.331 kb on - strand, within yfdKat 2469.332 kb on - strand, within yfdKat 2469.332 kb on - strand, within yfdKat 2469.332 kb on - strand, within yfdKat 2469.332 kb on - strand, within yfdKat 2469.354 kb on - strand, within yfdKat 2469.442 kb on - strand, within yfdKat 2469.442 kb on - strand, within yfdKat 2469.451 kb on - strand, within yfdKat 2469.457 kb on + strand, within yfdKat 2469.457 kb on + strand, within yfdKat 2469.459 kb on + strand, within yfdKat 2469.460 kb on - strand, within yfdKat 2469.461 kb on - strand, within yfdKat 2469.461 kb on - strand, within yfdKat 2469.463 kb on + strand, within yfdKat 2469.596 kb on + strandat 2469.596 kb on + strandat 2469.610 kb on - strandat 2469.626 kb on - strand, within yfdLat 2469.659 kb on - strand, within yfdLat 2469.663 kb on - strand, within yfdLat 2469.663 kb on - strand, within yfdLat 2469.685 kb on + strand, within yfdLat 2469.688 kb on - strand, within yfdLat 2469.695 kb on - strand, within yfdLat 2469.751 kb on - strand, within yfdLat 2469.754 kb on - strand, within yfdLat 2469.758 kb on - strand, within yfdLat 2469.763 kb on - strand, within yfdLat 2469.763 kb on - strand, within yfdLat 2469.763 kb on - strand, within yfdLat 2469.763 kb on - strand, within yfdLat 2469.763 kb on - strand, within yfdLat 2469.763 kb on - strand, within yfdLat 2469.772 kb on + strand, within yfdLat 2469.801 kb on - strand, within yfdLat 2469.852 kb on - strand, within yfdLat 2469.852 kb on - strand, within yfdLat 2469.857 kb on + strand, within yfdLat 2469.865 kb on + strand, within yfdLat 2469.867 kb on - strand, within yfdLat 2469.890 kb on - strand, within yfdLat 2469.940 kb on - strand, within yfdLat 2469.942 kb on - strand, within yfdLat 2469.942 kb on - strand, within yfdLat 2469.998 kb on + strand, within yfdLat 2470.038 kb on - strand, within yfdLat 2470.038 kb on - strand, within yfdLat 2470.049 kb on - strand, within yfdLat 2470.049 kb on - strand, within yfdLat 2470.090 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PoolT9D23
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2,467,924 + yfdI b2352 0.58 +3.8
2,467,924 + yfdI b2352 0.58 +3.8
2,467,937 + yfdI b2352 0.59 +3.8
2,467,998 + yfdI b2352 0.63 +1.8
2,468,061 + yfdI b2352 0.68 +1.5
2,468,407 + +2.8
2,468,525 - -0.3
2,468,525 - +0.7
2,468,527 - -0.4
2,468,527 - -2.2
2,468,527 - -1.0
2,468,553 - +1.4
2,468,553 - +2.6
2,468,557 - -0.7
2,468,566 - -0.8
2,468,566 - +0.1
2,468,592 - +0.7
2,468,592 - +0.8
2,468,593 - +0.4
2,468,595 - +1.6
2,468,595 - +0.9
2,468,651 - -0.2
2,468,651 - +0.2
2,468,658 - +0.5
2,468,660 + +2.2
2,468,662 - -0.3
2,468,665 + +2.8
2,468,673 - +0.4
2,468,676 + +1.0
2,468,676 + +1.2
2,468,676 + +1.0
2,468,711 + -1.3
2,468,715 - -0.1
2,468,717 + +0.0
2,468,719 - +1.0
2,468,722 + -0.3
2,468,737 + +0.7
2,468,757 - +1.5
2,468,757 - +2.6
2,468,764 - +1.8
2,468,778 - +0.4
2,468,778 - -0.7
2,468,804 + +0.6
2,468,808 - -1.2
2,468,808 - -0.9
2,468,808 - -1.2
2,468,812 + -0.6
2,468,818 + +1.7
2,468,818 + -1.2
2,468,819 + +1.4
2,468,819 + +0.3
2,468,821 - -2.0
2,468,829 - -1.3
2,468,838 - -1.0
2,468,887 + tfaS b2353 0.17 +1.4
2,468,890 + tfaS b2353 0.18 -1.5
2,468,895 + tfaS b2353 0.20 -1.9
2,468,895 + tfaS b2353 0.20 +0.5
2,468,895 - tfaS b2353 0.20 +0.4
2,468,897 - tfaS b2353 0.21 -0.9
2,468,897 - tfaS b2353 0.21 -0.3
2,468,903 - tfaS b2353 0.23 +0.2
2,468,903 - tfaS b2353 0.23 -0.1
2,468,905 + tfaS b2353 0.23 +0.4
2,468,905 + tfaS b2353 0.23 -0.1
2,468,905 + tfaS b2353 0.23 +1.7
2,468,906 - tfaS b2353 0.24 +0.0
2,468,912 + tfaS b2353 0.26 +0.6
2,468,913 - tfaS b2353 0.26 +1.0
2,468,913 - tfaS b2353 0.26 -0.2
2,468,918 + tfaS b2353 0.28 -1.2
2,468,926 - tfaS b2353 0.31 -0.2
2,468,936 + tfaS b2353 0.34 +0.9
2,468,936 + tfaS b2353 0.34 +0.1
2,468,936 - tfaS b2353 0.34 +1.7
2,468,939 + tfaS b2353 0.35 -1.0
2,468,940 + tfaS b2353 0.35 -0.1
2,468,940 + tfaS b2353 0.35 -0.1
2,468,946 - tfaS b2353 0.37 -0.7
2,468,958 - tfaS b2353 0.42 +0.6
2,468,960 - tfaS b2353 0.42 -0.2
2,469,002 + tfaS b2353 0.57 -0.4
2,469,006 - tfaS b2353 0.58 -1.1
2,469,015 + tfaS b2353 0.61 +0.7
2,469,019 + tfaS b2353 0.63 -0.3
2,469,042 - tfaS b2353 0.70 +1.1
2,469,042 - tfaS b2353 0.70 +1.9
2,469,057 - tfaS b2353 0.76 +2.4
2,469,057 - tfaS b2353 0.76 +0.8
2,469,095 + tfaS b2353 0.89 -0.1
2,469,095 + tfaS b2353 0.89 +0.2
2,469,100 + -0.2
2,469,105 + -0.6
2,469,115 + -1.5
2,469,131 + -0.4
2,469,164 + yfdK b2354 0.15 +2.8
2,469,164 + yfdK b2354 0.15 +0.4
2,469,164 + yfdK b2354 0.15 +2.2
2,469,164 + yfdK b2354 0.15 +2.2
2,469,164 + yfdK b2354 0.15 -0.7
2,469,164 + yfdK b2354 0.15 -0.2
2,469,164 + yfdK b2354 0.15 +1.8
2,469,164 + yfdK b2354 0.15 +1.8
2,469,170 - yfdK b2354 0.16 +0.9
2,469,170 - yfdK b2354 0.16 -1.5
2,469,172 - yfdK b2354 0.17 -0.9
2,469,179 + yfdK b2354 0.18 +4.4
2,469,210 + yfdK b2354 0.25 +1.8
2,469,210 + yfdK b2354 0.25 +2.8
2,469,236 - yfdK b2354 0.31 +0.6
2,469,241 - yfdK b2354 0.32 +0.0
2,469,331 - yfdK b2354 0.53 -0.9
2,469,331 - yfdK b2354 0.53 -0.1
2,469,331 - yfdK b2354 0.53 -0.0
2,469,332 - yfdK b2354 0.53 +2.3
2,469,332 - yfdK b2354 0.53 -0.4
2,469,332 - yfdK b2354 0.53 +0.8
2,469,332 - yfdK b2354 0.53 +1.5
2,469,354 - yfdK b2354 0.58 +0.7
2,469,442 - yfdK b2354 0.78 -0.3
2,469,442 - yfdK b2354 0.78 -1.1
2,469,451 - yfdK b2354 0.80 -1.3
2,469,457 + yfdK b2354 0.81 +0.7
2,469,457 + yfdK b2354 0.81 +1.8
2,469,459 + yfdK b2354 0.82 +3.8
2,469,460 - yfdK b2354 0.82 +1.1
2,469,461 - yfdK b2354 0.82 +1.0
2,469,461 - yfdK b2354 0.82 +0.0
2,469,463 + yfdK b2354 0.83 +3.8
2,469,596 + +2.8
2,469,596 + +3.8
2,469,610 - -0.7
2,469,626 - yfdL b2355 0.10 -0.7
2,469,659 - yfdL b2355 0.16 -0.5
2,469,663 - yfdL b2355 0.17 +0.1
2,469,663 - yfdL b2355 0.17 -0.8
2,469,685 + yfdL b2355 0.21 +3.8
2,469,688 - yfdL b2355 0.21 +0.1
2,469,695 - yfdL b2355 0.22 -0.2
2,469,751 - yfdL b2355 0.32 +0.6
2,469,754 - yfdL b2355 0.32 -0.4
2,469,758 - yfdL b2355 0.33 -0.1
2,469,763 - yfdL b2355 0.34 -0.3
2,469,763 - yfdL b2355 0.34 +0.7
2,469,763 - yfdL b2355 0.34 -0.1
2,469,763 - yfdL b2355 0.34 -2.0
2,469,763 - yfdL b2355 0.34 +0.5
2,469,763 - yfdL b2355 0.34 -1.8
2,469,772 + yfdL b2355 0.36 +2.8
2,469,801 - yfdL b2355 0.41 -1.3
2,469,852 - yfdL b2355 0.49 -1.4
2,469,852 - yfdL b2355 0.49 +0.5
2,469,857 + yfdL b2355 0.50 +3.8
2,469,865 + yfdL b2355 0.52 +2.2
2,469,867 - yfdL b2355 0.52 -1.4
2,469,890 - yfdL b2355 0.56 -0.5
2,469,940 - yfdL b2355 0.65 -0.4
2,469,942 - yfdL b2355 0.65 -0.6
2,469,942 - yfdL b2355 0.65 -0.0
2,469,998 + yfdL b2355 0.75 +1.0
2,470,038 - yfdL b2355 0.82 +0.3
2,470,038 - yfdL b2355 0.82 -0.4
2,470,049 - yfdL b2355 0.83 -1.8
2,470,049 - yfdL b2355 0.83 +0.3
2,470,090 - -0.9

Or see this region's nucleotide sequence