Experiment: PoolT9D18
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybhG and ybiH overlap by 1 nucleotides ybiH and rhlE are separated by 228 nucleotides rhlE and ybiA are separated by 231 nucleotides ybiA and dinG are separated by 119 nucleotides
b0795: ybhG - hypothetical protein (NCBI), at 828,197 to 829,195
ybhG
b0796: ybiH - putative transcriptional regulator (VIMSS), at 829,195 to 829,866
ybiH
b0797: rhlE - RNA helicase (NCBI), at 830,095 to 831,459
rhlE
b0798: ybiA - hypothetical protein (NCBI), at 831,691 to 832,173
ybiA
b0799: dinG - ATP-dependent DNA helicase (NCBI), at 832,293 to 834,443
dinG
Position (kb) 830
831
832 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 829.295 kb on - strand, within ybiH at 829.360 kb on + strand, within ybiH at 829.360 kb on + strand, within ybiH at 829.535 kb on - strand, within ybiH at 829.598 kb on + strand, within ybiH at 829.679 kb on + strand, within ybiH at 829.841 kb on - strand at 829.841 kb on - strand at 829.845 kb on - strand at 829.858 kb on + strand at 829.996 kb on + strand at 830.051 kb on + strand at 830.059 kb on + strand at 830.059 kb on + strand at 830.123 kb on + strand at 830.123 kb on + strand at 830.123 kb on + strand at 830.146 kb on + strand at 830.156 kb on + strand at 830.159 kb on - strand at 830.176 kb on - strand at 830.182 kb on + strand at 830.182 kb on + strand at 830.192 kb on - strand at 830.249 kb on - strand, within rhlE at 830.277 kb on - strand, within rhlE at 830.277 kb on - strand, within rhlE at 830.333 kb on + strand, within rhlE at 830.333 kb on + strand, within rhlE at 830.335 kb on - strand, within rhlE at 830.335 kb on - strand, within rhlE at 830.341 kb on - strand, within rhlE at 830.390 kb on + strand, within rhlE at 830.531 kb on + strand, within rhlE at 830.836 kb on + strand, within rhlE at 830.850 kb on - strand, within rhlE at 830.860 kb on - strand, within rhlE at 830.860 kb on - strand, within rhlE at 831.483 kb on + strand at 831.535 kb on - strand at 831.542 kb on - strand at 831.542 kb on - strand at 831.679 kb on + strand at 831.679 kb on + strand at 831.733 kb on - strand at 831.733 kb on - strand at 831.752 kb on + strand, within ybiA at 831.752 kb on + strand, within ybiA at 831.942 kb on - strand, within ybiA at 832.127 kb on + strand at 832.127 kb on + strand at 832.158 kb on - strand at 832.250 kb on + strand at 832.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction PoolT9D18 remove 829,295 - ybiH b0796 0.15 -0.5 829,360 + ybiH b0796 0.25 -0.2 829,360 + ybiH b0796 0.25 -0.8 829,535 - ybiH b0796 0.51 -1.0 829,598 + ybiH b0796 0.60 +0.2 829,679 + ybiH b0796 0.72 +0.2 829,841 - +0.2 829,841 - +1.2 829,845 - +0.8 829,858 + +0.4 829,996 + -1.0 830,051 + +0.1 830,059 + +0.8 830,059 + -0.4 830,123 + +0.3 830,123 + +1.2 830,123 + -0.5 830,146 + +0.1 830,156 + +0.4 830,159 - +0.5 830,176 - +0.4 830,182 + -1.0 830,182 + +1.0 830,192 - +2.3 830,249 - rhlE b0797 0.11 -1.2 830,277 - rhlE b0797 0.13 +0.7 830,277 - rhlE b0797 0.13 +0.5 830,333 + rhlE b0797 0.17 +0.5 830,333 + rhlE b0797 0.17 -1.9 830,335 - rhlE b0797 0.18 -0.9 830,335 - rhlE b0797 0.18 +0.5 830,341 - rhlE b0797 0.18 +0.9 830,390 + rhlE b0797 0.22 -0.1 830,531 + rhlE b0797 0.32 +0.5 830,836 + rhlE b0797 0.54 -1.5 830,850 - rhlE b0797 0.55 +4.5 830,860 - rhlE b0797 0.56 +0.9 830,860 - rhlE b0797 0.56 -0.4 831,483 + +0.1 831,535 - +0.0 831,542 - +0.2 831,542 - -0.1 831,679 + +0.4 831,679 + +3.1 831,733 - -0.5 831,733 - -0.4 831,752 + ybiA b0798 0.13 -0.0 831,752 + ybiA b0798 0.13 -0.2 831,942 - ybiA b0798 0.52 -0.1 832,127 + +0.1 832,127 + -1.1 832,158 - -0.1 832,250 + +2.1 832,353 - +0.1
Or see this region's nucleotide sequence