Experiment: NoPhageControl|T7phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt gntU and gntK are separated by 3 nucleotides gntK and gntR are separated by 138 nucleotides gntR and yhhW are separated by 223 nucleotides
b4476: gntU - gluconate transporter, low affinity GNT 1 system (NCBI), at 3,573,744 to 3,575,084
gntU
b3437: gntK - gluconokinase 2, thermoresistant (VIMSS), at 3,575,088 to 3,575,615
gntK
b3438: gntR - DNA-binding transcriptional repressor (NCBI), at 3,575,754 to 3,576,749
gntR
b3439: yhhW - hypothetical protein (NCBI), at 3,576,973 to 3,577,668
yhhW
Position (kb)
3575
3576
3577 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3574.829 kb on - strand, within gntU at 3574.894 kb on - strand, within gntU at 3574.965 kb on - strand at 3574.972 kb on + strand at 3574.972 kb on + strand at 3574.980 kb on - strand at 3575.042 kb on + strand at 3575.045 kb on - strand at 3575.083 kb on - strand at 3575.159 kb on + strand, within gntK at 3575.162 kb on + strand, within gntK at 3575.162 kb on + strand, within gntK at 3575.174 kb on + strand, within gntK at 3575.197 kb on + strand, within gntK at 3575.314 kb on + strand, within gntK at 3575.380 kb on - strand, within gntK at 3575.510 kb on - strand, within gntK at 3575.510 kb on - strand, within gntK at 3575.514 kb on + strand, within gntK at 3575.528 kb on - strand, within gntK at 3575.560 kb on + strand, within gntK at 3575.595 kb on + strand at 3575.595 kb on + strand at 3575.608 kb on - strand at 3575.629 kb on - strand at 3575.629 kb on - strand at 3575.666 kb on + strand at 3575.666 kb on + strand at 3575.709 kb on - strand at 3575.720 kb on + strand at 3575.722 kb on + strand at 3575.722 kb on + strand at 3575.728 kb on + strand at 3575.735 kb on - strand at 3575.814 kb on - strand at 3575.869 kb on + strand, within gntR at 3575.869 kb on + strand, within gntR at 3575.873 kb on + strand, within gntR at 3575.905 kb on - strand, within gntR at 3575.905 kb on - strand, within gntR at 3575.923 kb on - strand, within gntR at 3576.111 kb on + strand, within gntR at 3576.117 kb on + strand, within gntR at 3576.117 kb on + strand, within gntR at 3576.117 kb on - strand, within gntR at 3576.137 kb on - strand, within gntR at 3576.137 kb on - strand, within gntR at 3576.199 kb on + strand, within gntR at 3576.235 kb on + strand, within gntR at 3576.450 kb on + strand, within gntR at 3576.538 kb on + strand, within gntR at 3576.538 kb on + strand, within gntR at 3576.594 kb on + strand, within gntR at 3576.594 kb on + strand, within gntR at 3576.594 kb on + strand, within gntR at 3576.639 kb on + strand, within gntR at 3576.703 kb on + strand at 3576.703 kb on + strand at 3576.709 kb on - strand at 3576.709 kb on - strand at 3576.709 kb on - strand at 3576.711 kb on + strand at 3576.715 kb on + strand at 3576.715 kb on + strand at 3576.721 kb on - strand at 3576.721 kb on - strand at 3576.728 kb on + strand at 3576.728 kb on + strand at 3576.798 kb on + strand at 3576.808 kb on + strand at 3576.808 kb on + strand at 3576.862 kb on + strand at 3576.875 kb on - strand at 3576.875 kb on - strand at 3576.875 kb on - strand at 3576.875 kb on - strand at 3576.880 kb on - strand at 3576.900 kb on + strand at 3576.923 kb on - strand at 3576.923 kb on - strand at 3576.959 kb on - strand at 3576.959 kb on - strand at 3577.025 kb on - strand at 3577.025 kb on - strand at 3577.032 kb on - strand at 3577.066 kb on + strand, within yhhW at 3577.141 kb on + strand, within yhhW at 3577.188 kb on - strand, within yhhW at 3577.193 kb on - strand, within yhhW at 3577.251 kb on - strand, within yhhW at 3577.252 kb on - strand, within yhhW at 3577.252 kb on - strand, within yhhW at 3577.254 kb on + strand, within yhhW at 3577.262 kb on - strand, within yhhW at 3577.283 kb on - strand, within yhhW at 3577.321 kb on - strand, within yhhW at 3577.348 kb on + strand, within yhhW at 3577.351 kb on - strand, within yhhW at 3577.359 kb on + strand, within yhhW at 3577.380 kb on + strand, within yhhW at 3577.396 kb on - strand, within yhhW at 3577.432 kb on - strand, within yhhW at 3577.433 kb on + strand, within yhhW at 3577.449 kb on + strand, within yhhW at 3577.462 kb on - strand, within yhhW at 3577.510 kb on + strand, within yhhW at 3577.510 kb on + strand, within yhhW at 3577.510 kb on - strand, within yhhW at 3577.535 kb on + strand, within yhhW at 3577.553 kb on + strand, within yhhW at 3577.618 kb on - strand at 3577.618 kb on - strand at 3577.619 kb on - strand at 3577.662 kb on - strand at 3577.704 kb on + strand at 3577.704 kb on + strand at 3577.707 kb on - strand at 3577.719 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl|T7phage remove 3,574,829 - gntU b4476 0.81 +0.0 3,574,894 - gntU b4476 0.86 +0.2 3,574,965 - -1.3 3,574,972 + +0.1 3,574,972 + +0.5 3,574,980 - -0.5 3,575,042 + +1.2 3,575,045 - +0.1 3,575,083 - +0.9 3,575,159 + gntK b3437 0.13 +0.9 3,575,162 + gntK b3437 0.14 -0.1 3,575,162 + gntK b3437 0.14 -0.9 3,575,174 + gntK b3437 0.16 -0.0 3,575,197 + gntK b3437 0.21 +0.6 3,575,314 + gntK b3437 0.43 -0.2 3,575,380 - gntK b3437 0.55 -1.8 3,575,510 - gntK b3437 0.80 +1.0 3,575,510 - gntK b3437 0.80 -0.0 3,575,514 + gntK b3437 0.81 -1.0 3,575,528 - gntK b3437 0.83 +0.3 3,575,560 + gntK b3437 0.89 -0.2 3,575,595 + +1.3 3,575,595 + +0.9 3,575,608 - +1.3 3,575,629 - -0.4 3,575,629 - -1.5 3,575,666 + -0.3 3,575,666 + +2.3 3,575,709 - -1.1 3,575,720 + -0.1 3,575,722 + -0.1 3,575,722 + +0.7 3,575,728 + -0.4 3,575,735 - +0.7 3,575,814 - -0.7 3,575,869 + gntR b3438 0.12 +0.4 3,575,869 + gntR b3438 0.12 -0.8 3,575,873 + gntR b3438 0.12 -0.4 3,575,905 - gntR b3438 0.15 -0.9 3,575,905 - gntR b3438 0.15 -0.0 3,575,923 - gntR b3438 0.17 -2.7 3,576,111 + gntR b3438 0.36 -0.6 3,576,117 + gntR b3438 0.36 -1.1 3,576,117 + gntR b3438 0.36 -1.6 3,576,117 - gntR b3438 0.36 -0.1 3,576,137 - gntR b3438 0.38 +0.5 3,576,137 - gntR b3438 0.38 -2.5 3,576,199 + gntR b3438 0.45 -0.3 3,576,235 + gntR b3438 0.48 -2.6 3,576,450 + gntR b3438 0.70 -0.8 3,576,538 + gntR b3438 0.79 +0.5 3,576,538 + gntR b3438 0.79 +0.2 3,576,594 + gntR b3438 0.84 -0.6 3,576,594 + gntR b3438 0.84 -0.5 3,576,594 + gntR b3438 0.84 -1.8 3,576,639 + gntR b3438 0.89 -0.6 3,576,703 + -0.2 3,576,703 + +0.1 3,576,709 - -0.5 3,576,709 - -0.8 3,576,709 - -0.1 3,576,711 + -0.3 3,576,715 + -0.2 3,576,715 + -1.3 3,576,721 - +0.4 3,576,721 - -1.0 3,576,728 + +0.4 3,576,728 + -2.2 3,576,798 + -0.1 3,576,808 + -1.4 3,576,808 + +0.6 3,576,862 + +0.1 3,576,875 - -1.5 3,576,875 - +0.6 3,576,875 - +0.6 3,576,875 - -1.1 3,576,880 - +0.5 3,576,900 + -0.6 3,576,923 - +0.5 3,576,923 - -0.0 3,576,959 - +0.2 3,576,959 - +0.7 3,577,025 - -1.2 3,577,025 - +0.5 3,577,032 - -1.3 3,577,066 + yhhW b3439 0.13 +1.2 3,577,141 + yhhW b3439 0.24 +0.2 3,577,188 - yhhW b3439 0.31 -0.8 3,577,193 - yhhW b3439 0.32 +0.8 3,577,251 - yhhW b3439 0.40 +1.4 3,577,252 - yhhW b3439 0.40 +0.3 3,577,252 - yhhW b3439 0.40 -0.6 3,577,254 + yhhW b3439 0.40 -1.6 3,577,262 - yhhW b3439 0.42 +0.1 3,577,283 - yhhW b3439 0.45 +0.8 3,577,321 - yhhW b3439 0.50 -0.5 3,577,348 + yhhW b3439 0.54 -0.3 3,577,351 - yhhW b3439 0.54 +0.1 3,577,359 + yhhW b3439 0.55 -0.0 3,577,380 + yhhW b3439 0.58 +0.1 3,577,396 - yhhW b3439 0.61 +0.3 3,577,432 - yhhW b3439 0.66 +0.5 3,577,433 + yhhW b3439 0.66 -0.1 3,577,449 + yhhW b3439 0.68 -0.8 3,577,462 - yhhW b3439 0.70 +1.5 3,577,510 + yhhW b3439 0.77 -0.3 3,577,510 + yhhW b3439 0.77 -0.7 3,577,510 - yhhW b3439 0.77 -0.1 3,577,535 + yhhW b3439 0.81 -0.2 3,577,553 + yhhW b3439 0.83 +0.1 3,577,618 - +1.2 3,577,618 - +0.6 3,577,619 - +0.1 3,577,662 - +0.0 3,577,704 + -0.2 3,577,704 + +0.8 3,577,707 - +0.1 3,577,719 + -0.0
Or see this region's nucleotide sequence