Experiment: NoPhageControl|T7phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt yihG and polA are separated by 363 nucleotides polA and spf are separated by 146 nucleotides spf and yihA are separated by 125 nucleotides
b3862: yihG - predicted endonuclease (NCBI), at 4,043,693 to 4,044,625
yihG
b3863: polA - DNA polymerase I (NCBI), at 4,044,989 to 4,047,775
polA
b3864: spf - Spot 42 RNA (NCBI), at 4,047,922 to 4,048,030
spf
b3865: yihA - GTP-binding protein (RefSeq), at 4,048,156 to 4,048,788
yihA
Position (kb)
4044
4045
4046
4047
4048 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 4044.086 kb on - strand, within yihG at 4044.145 kb on - strand, within yihG at 4044.194 kb on - strand, within yihG at 4044.199 kb on - strand, within yihG at 4044.242 kb on - strand, within yihG at 4044.242 kb on - strand, within yihG at 4044.264 kb on + strand, within yihG at 4044.264 kb on + strand, within yihG at 4044.286 kb on - strand, within yihG at 4044.312 kb on + strand, within yihG at 4044.349 kb on + strand, within yihG at 4044.349 kb on + strand, within yihG at 4044.353 kb on - strand, within yihG at 4044.357 kb on - strand, within yihG at 4044.376 kb on + strand, within yihG at 4044.386 kb on - strand, within yihG at 4044.387 kb on + strand, within yihG at 4044.399 kb on - strand, within yihG at 4044.399 kb on - strand, within yihG at 4044.401 kb on + strand, within yihG at 4044.401 kb on + strand, within yihG at 4044.409 kb on + strand, within yihG at 4044.409 kb on - strand, within yihG at 4044.409 kb on - strand, within yihG at 4044.409 kb on - strand, within yihG at 4044.491 kb on - strand, within yihG at 4044.533 kb on - strand at 4044.553 kb on + strand at 4044.592 kb on - strand at 4044.629 kb on - strand at 4044.629 kb on - strand at 4044.629 kb on - strand at 4044.629 kb on - strand at 4044.629 kb on - strand at 4044.890 kb on - strand at 4044.890 kb on - strand at 4044.960 kb on - strand at 4044.962 kb on - strand at 4044.962 kb on - strand at 4044.982 kb on + strand at 4044.985 kb on + strand at 4044.985 kb on - strand at 4044.985 kb on - strand at 4045.938 kb on + strand, within polA at 4046.840 kb on + strand, within polA at 4046.907 kb on + strand, within polA at 4047.703 kb on + strand at 4047.740 kb on + strand at 4047.740 kb on + strand at 4047.819 kb on - strand at 4047.920 kb on + strand at 4047.925 kb on + strand at 4048.005 kb on + strand, within spf at 4048.054 kb on - strand at 4048.117 kb on + strand at 4048.201 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl|T7phage remove 4,044,086 - yihG b3862 0.42 +0.7 4,044,145 - yihG b3862 0.48 +0.1 4,044,194 - yihG b3862 0.54 -0.1 4,044,199 - yihG b3862 0.54 -0.2 4,044,242 - yihG b3862 0.59 -0.8 4,044,242 - yihG b3862 0.59 +0.1 4,044,264 + yihG b3862 0.61 +0.7 4,044,264 + yihG b3862 0.61 -0.1 4,044,286 - yihG b3862 0.64 -0.2 4,044,312 + yihG b3862 0.66 +0.2 4,044,349 + yihG b3862 0.70 +1.1 4,044,349 + yihG b3862 0.70 +2.3 4,044,353 - yihG b3862 0.71 +0.2 4,044,357 - yihG b3862 0.71 +0.1 4,044,376 + yihG b3862 0.73 -0.3 4,044,386 - yihG b3862 0.74 +0.7 4,044,387 + yihG b3862 0.74 -1.4 4,044,399 - yihG b3862 0.76 +0.7 4,044,399 - yihG b3862 0.76 +0.6 4,044,401 + yihG b3862 0.76 -0.3 4,044,401 + yihG b3862 0.76 +1.0 4,044,409 + yihG b3862 0.77 +1.2 4,044,409 - yihG b3862 0.77 +1.8 4,044,409 - yihG b3862 0.77 +0.7 4,044,409 - yihG b3862 0.77 +0.4 4,044,491 - yihG b3862 0.86 +0.2 4,044,533 - +1.3 4,044,553 + +0.8 4,044,592 - +0.4 4,044,629 - -1.3 4,044,629 - +0.7 4,044,629 - +0.2 4,044,629 - -0.0 4,044,629 - -0.5 4,044,890 - -0.6 4,044,890 - +0.4 4,044,960 - +0.8 4,044,962 - -1.3 4,044,962 - -0.4 4,044,982 + +1.0 4,044,985 + -1.5 4,044,985 - +0.2 4,044,985 - -2.3 4,045,938 + polA b3863 0.34 -0.1 4,046,840 + polA b3863 0.66 -0.8 4,046,907 + polA b3863 0.69 +0.4 4,047,703 + -1.1 4,047,740 + -0.8 4,047,740 + -0.3 4,047,819 - -0.2 4,047,920 + -0.0 4,047,925 + -1.2 4,048,005 + spf b3864 0.76 +0.6 4,048,054 - -0.7 4,048,117 + -1.1 4,048,201 - +1.2
Or see this region's nucleotide sequence