Experiment: NoPhageControl|T7phage
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ybiU and ybiV are separated by 151 nucleotides ybiV and ybiW are separated by 145 nucleotides
b0821: ybiU - hypothetical protein (NCBI), at 857,019 to 858,284
ybiU
b0822: ybiV - predicted hydrolase (NCBI), at 858,436 to 859,251
ybiV
b0823: ybiW - predicted pyruvate formate lyase (NCBI), at 859,397 to 861,829
ybiW
Position (kb) 858
859
860 Strain fitness (log2 ratio) -2
-1
0
1 at 857.485 kb on - strand, within ybiU at 857.497 kb on - strand, within ybiU at 857.507 kb on - strand, within ybiU at 857.507 kb on - strand, within ybiU at 857.550 kb on - strand, within ybiU at 857.555 kb on - strand, within ybiU at 857.739 kb on - strand, within ybiU at 857.743 kb on - strand, within ybiU at 857.743 kb on - strand, within ybiU at 857.766 kb on + strand, within ybiU at 857.852 kb on - strand, within ybiU at 858.042 kb on - strand, within ybiU at 858.090 kb on + strand, within ybiU at 858.122 kb on - strand, within ybiU at 858.183 kb on + strand at 858.183 kb on + strand at 858.259 kb on - strand at 858.400 kb on - strand at 858.400 kb on - strand at 858.424 kb on + strand at 858.439 kb on + strand at 858.457 kb on + strand at 858.460 kb on + strand at 858.556 kb on - strand, within ybiV at 858.604 kb on - strand, within ybiV at 858.759 kb on + strand, within ybiV at 858.796 kb on - strand, within ybiV at 858.920 kb on - strand, within ybiV at 859.134 kb on + strand, within ybiV at 859.134 kb on + strand, within ybiV at 859.446 kb on - strand at 859.446 kb on - strand at 859.472 kb on + strand at 859.486 kb on + strand at 859.569 kb on + strand at 859.569 kb on + strand at 859.651 kb on + strand, within ybiW at 859.661 kb on - strand, within ybiW at 859.740 kb on + strand, within ybiW at 859.775 kb on + strand, within ybiW at 859.783 kb on - strand, within ybiW at 859.783 kb on - strand, within ybiW at 859.876 kb on + strand, within ybiW at 859.884 kb on - strand, within ybiW at 859.884 kb on - strand, within ybiW at 859.967 kb on - strand, within ybiW at 860.047 kb on + strand, within ybiW at 860.081 kb on - strand, within ybiW at 860.081 kb on - strand, within ybiW at 860.146 kb on + strand, within ybiW at 860.210 kb on + strand, within ybiW at 860.228 kb on + strand, within ybiW at 860.228 kb on + strand, within ybiW at 860.245 kb on - strand, within ybiW
Per-strain Table
Position Strand Gene LocusTag Fraction NoPhageControl|T7phage remove 857,485 - ybiU b0821 0.37 -0.2 857,497 - ybiU b0821 0.38 +0.1 857,507 - ybiU b0821 0.39 +0.2 857,507 - ybiU b0821 0.39 -0.2 857,550 - ybiU b0821 0.42 +0.3 857,555 - ybiU b0821 0.42 +0.0 857,739 - ybiU b0821 0.57 +0.1 857,743 - ybiU b0821 0.57 +0.6 857,743 - ybiU b0821 0.57 +0.6 857,766 + ybiU b0821 0.59 +0.4 857,852 - ybiU b0821 0.66 -0.9 858,042 - ybiU b0821 0.81 -0.5 858,090 + ybiU b0821 0.85 +0.3 858,122 - ybiU b0821 0.87 +0.4 858,183 + +0.2 858,183 + +0.8 858,259 - -0.1 858,400 - -0.8 858,400 - +0.9 858,424 + -0.4 858,439 + +0.4 858,457 + -0.5 858,460 + -0.7 858,556 - ybiV b0822 0.15 -0.2 858,604 - ybiV b0822 0.21 -2.1 858,759 + ybiV b0822 0.40 -1.1 858,796 - ybiV b0822 0.44 -0.7 858,920 - ybiV b0822 0.59 -0.9 859,134 + ybiV b0822 0.86 -0.1 859,134 + ybiV b0822 0.86 -0.7 859,446 - -0.6 859,446 - +0.6 859,472 + +0.2 859,486 + +0.5 859,569 + +0.1 859,569 + +0.1 859,651 + ybiW b0823 0.10 +0.5 859,661 - ybiW b0823 0.11 -0.3 859,740 + ybiW b0823 0.14 -0.1 859,775 + ybiW b0823 0.16 +0.1 859,783 - ybiW b0823 0.16 +1.0 859,783 - ybiW b0823 0.16 +0.3 859,876 + ybiW b0823 0.20 -0.7 859,884 - ybiW b0823 0.20 -1.2 859,884 - ybiW b0823 0.20 +0.5 859,967 - ybiW b0823 0.23 +0.1 860,047 + ybiW b0823 0.27 -0.6 860,081 - ybiW b0823 0.28 -2.5 860,081 - ybiW b0823 0.28 -0.1 860,146 + ybiW b0823 0.31 -0.3 860,210 + ybiW b0823 0.33 -0.9 860,228 + ybiW b0823 0.34 -2.3 860,228 + ybiW b0823 0.34 +1.3 860,245 - ybiW b0823 0.35 -0.1
Or see this region's nucleotide sequence